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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT020944; SV 1; linear; mRNA; STD; MAM; 1794 BP.
XX
AC   BT020944;
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DT   17-FEB-2005 (Rel. 82, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 4)
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DE   Bos taurus pipecolic acid oxidase (PIPOX), mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RP   1-1794
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
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RN   [2]
RP   1-1794
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
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RN   [3]
RP   1-1794
RA   Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W.,
RA   Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
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DR   Ensembl-Gn; ENSBTAG00000007946; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000010444; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1794
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="4BOV"
FT                   /clone="4BOV2K17; plate 2 row K column 17"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from day 20 and day 40
FT                   embryos."
FT                   /db_xref="taxon:9913"
FT   gene            1..1794
FT                   /gene="PIPOX"
FT                   /note="putative, similar to GeneID: 51268"
FT   CDS             75..1253
FT                   /codon_start=1
FT                   /gene="PIPOX"
FT                   /product="L-pipecolic acid oxidase"
FT                   /db_xref="GOA:Q29RU9"
FT                   /db_xref="InterPro:IPR006281"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q29RU9"
FT                   /protein_id="AAX08961.1"
FT                   /translation="MAAQRELYDAIVIGAGIQGCFTAYHLAKHSKKVLLLEQFFLPHSR
FT                   GSSHGQSRIIRRAYPEDFYTQMMAECYSLWAQLEHEAGTQLYRQTGLLLLGMKENPELK
FT                   IIQATLSRQGVEHQCLSSEELKQRFPNIRLARGEVGLLEVSGGVLYADKALRALQDAIR
FT                   QLGGIVHDGEKVVEIKSGLPVMVKTTSRSYQAKSLIITAGPWTNRLLRPLGAELPLQTL
FT                   RINVCYWQEKVPGSYSVSQAFPCFMGLGLSLAPHHIYGLPSREYPGLMKVCYHHGNNAD
FT                   PEERDCPAAFSDIQDVHILSGFVRDHLPDLQPEPAVMEHCMYTNTPDGHFVLDRHPKYD
FT                   NIVIGAGFSGHGFKLSPVVGKILYELSMKLTPSYDLTPFRISRFPSLGKAHL"
XX
SQ   Sequence 1794 BP; 445 A; 472 C; 473 G; 404 T; 0 other;
     tgcctccgcc ggccctctct ggtctctgag gtctgtgtgg tctctgaggc tgtagggcta        60
     attcagcggg caggatggct gctcagaggg agctctatga cgccattgtg atcggggcag       120
     gcatccaggg ctgcttcacg gcgtaccacc tggccaaaca cagcaagaaa gtcctcctgc       180
     tggagcagtt ctttctcccg cactcccgag gaagctccca tgggcagagc cggatcatcc       240
     gaagggcata cccagaagat ttctacaccc agatgatggc tgagtgctac tccctgtggg       300
     cccagctgga gcatgaggcg ggaacccaat tatacaggca gactggacta ctgctgctgg       360
     gaatgaagga gaacccagaa ttaaagataa tccaggctac tttgtcgagg cagggagtgg       420
     agcaccagtg tctttcatct gaggaactga agcaacgttt ccccaatatt cggttggcca       480
     ggggagaagt ggggctcttg gaggtgtccg gaggagttct ctatgccgac aaggcactca       540
     gagccctcca ggatgcaatt cgacagctag gtggcatagt gcatgatgga gagaaggtag       600
     tggagataaa atcagggcta ccagtcatgg tgaaaactac ctccaggagc taccaagcca       660
     agagcttgat catcacggca ggtccttgga ccaaccggct cctccgtccc ttgggagctg       720
     agctacctct ccagaccctg cggatcaacg tgtgttactg gcaagagaag gttcctggaa       780
     gctacagtgt gtcccaggcc tttccgtgtt tcatgggcct gggcctcagc ctggctcctc       840
     accacatcta cgggctgccc tccagagagt acccagggct gatgaaggtc tgctatcacc       900
     acggcaacaa tgcagatccc gaggagcggg actgcccagc agctttctca gacatccaag       960
     atgtccacat cctgagcggt tttgtcagag atcacttacc tgacctgcag cccgagcctg      1020
     ctgtgatgga gcattgcatg tacacgaaca cccccgatgg gcacttcgtt cttgatagac      1080
     acccaaagta cgacaacatt gtcattggtg ctggattctc tgggcatggg ttcaagttgt      1140
     cccctgtcgt ggggaagatc ctgtacgaat taagcatgaa attaacgcca tcctatgact      1200
     tgacaccttt tcgaatcagc cgctttccca gcctgggcaa agcccacctt tgaccccctg      1260
     gccagcagct ccccttctgt gcccaggagt tggaaataaa gctgggaaag acatgtaaga      1320
     ggaagaaaaa ggctgtggga ggctatcctt tcctcgtgac tctcttcagt cccccataaa      1380
     caccggctga ttgaacgtac cttctttctc tggccaactc cccaatcaca caccactttt      1440
     ttgcttcagt tcaatcagat attctacaat cacagagtgc caaggacctt ggaggtggat      1500
     gtctcagtaa ggaaggggca taaggaccgg ctcaggagac caaaacagct attaaaattc      1560
     tcttcacggg ggcatttgtt gaattttgga tagatctgat gaaagttgcc taggggaggg      1620
     taaacaagat agtctgtaga ccattcatgc ccgtggagct ccttttcata aaactagagc      1680
     catcctctat cacgaacccc cacaaaatgt ggctcgtcgt gggtgcacag caaatgtttg      1740
     ttgaaaaaaa aaaaagtgtt gaacaaacag ataagtaaat gactgccttg catg            1794
//
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