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EBI DbfetchID BT020760; SV 1; linear; mRNA; STD; MAM; 1866 BP. XX AC BT020760; XX DT 17-FEB-2005 (Rel. 82, Created) DT 27-NOV-2008 (Rel. 97, Last updated, Version 4) XX DE Bos taurus Rab geranylgeranyltransferase, alpha subunit (RABGGTA), mRNA, DE complete cds. XX KW FLI_CDNA. XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RP 1-1866 RX DOI; 10.1101/gr.170101 RX PUBMED; 11282978. RA Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E., RA Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P., RA Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I., RA Karamycheva S., Liang F., Quackenbush J., Keele J.W.; RT "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries RT and construction of a gene index for cattle"; RL Genome Res. 11(4):626-630(2001). XX RN [2] RP 1-1866 RX DOI; 10.1186/1471-2164-6-166 RX PUBMED; 16305752. RA Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L., RA Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.; RT "Characterization of 954 bovine full-CDS cDNA sequences"; RL BMC Genomics 6:166-166(2005). XX RN [3] RP 1-1866 RA Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W., RA Snelling W.M., Weidmann R.T., Smith T.P.L.; RT ; RL Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases. RL Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center, RL P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA XX DR Ensembl-Gn; ENSBTAG00000018796; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000036474; Bos_taurus. XX CC Contact: Gregory P. Harhay at harhay@email.marc.usda.gov. XX FH Key Location/Qualifiers FH FT source 1..1866 FT /organism="Bos taurus" FT /lab_host="Escherichia coli DH10B" FT /mol_type="mRNA" FT /clone_lib="2BOV" FT /clone="2BOV115P2; plate 115 row P column 2" FT /tissue_type="pooled" FT /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI; FT Library made from pooled tissue from testis, thymus, FT semitendonosus muscle, longissimus muscle, pancreas, FT adrenal, and endometrium." FT /db_xref="taxon:9913" FT gene 1..1866 FT /gene="RABGGTA" FT /note="putative, similar to GeneID: 5875" FT CDS 98..1801 FT /codon_start=1 FT /gene="RABGGTA" FT /product="Rab geranylgeranyltransferase, alpha subunit" FT /db_xref="GOA:Q5EA80" FT /db_xref="InterPro:IPR009087" FT /db_xref="UniProtKB/Swiss-Prot:Q5EA80" FT /protein_id="AAX08777.1" FT /translation="MHGRLKVKTSEEQAEAKRLEREQKLKLYQAATQTVFQKRQAGELD FT ESVLELTSQILGANPDFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNP FT KSYGTWHHRCWLLSRLPEPNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEE FT LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTD FT PNDQSAWFYHRWLLGRADPQDALRCLHVSRDEACLTVSFSRPLLVGSGMETLLLMVDES FT PLAVEWRTPEGRNRPSHIWLCDLPATSLNDQLPQHTFRVIWTAGDAQKECVLLKGRQEG FT WCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLQ FT YEKETLQYFQTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAEVRVLHLGHKDLTVLCH FT LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQANDNAIESLDGVTNLPRLQELILCN FT NRLQQPAVLQPLTSCPRLTLLNLQGNPLCQAEGSSEHLAELLPSVSSILT" XX SQ Sequence 1866 BP; 366 A; 594 C; 539 G; 367 T; 0 other; ggcgccgcag ctccgcgtcc ggctcgcctc ctcccagcac aggtttcacg ggcaccagtg 60 gacccttctt cccctgccct gaatctgagc cagcaccatg cacgggcgcc tgaaggtgaa 120 gacatcggaa gagcaagcgg aagccaaaag actagagcgg gaacagaagc tgaagctata 180 ccaggcagcc acccagactg tattccagaa gcgccaggct ggagaactgg atgagtcagt 240 gctggaactg acaagccaga ttctgggagc caaccctgac tttgccaccc tctggaattg 300 tcgacgagag gtgctccagc agctggaggt ccagaagtcc cccgaggagt tggccacttt 360 ggtgaaggca gaactgggct tcctggagag ctgcctgagg gtgaacccca agtcttatgg 420 tacctggcac caccgctgct ggctgctgag ccgcctgcca gagcccaact gggcccggga 480 gctggagttg tgtgcccgct tcctcgaggt tgatgagcgg aactttcact gctgggacta 540 ccggcggttt gtggctgcac aggcagctgt gccccctgca gaggagcttg ccttcactga 600 cagcctcatc acccgaaact tctccaacta ctcctcctgg cattaccgct cctgcctctt 660 gccccagctg caccctcagc cagactcagg accccagggg cgcctccctg aggatgtgct 720 gctcaaagag ctggagctgg tgcagaacgc cttcttcact gatcccaatg atcagagtgc 780 ctggttctac catcggtggc tcctgggacg agctgatccc caggatgccc tgcgctgcct 840 gcacgtgagc cgggatgagg cttgcctgac tgtctccttc tctcggcccc tcctcgtggg 900 ctccggcatg gagaccttgc tgctcatggt tgatgagtca cccctggctg tggagtggag 960 gaccccagag ggcaggaacc ggcctagcca catctggctc tgtgacctgc ccgccacctc 1020 cctcaacgat cagttgcccc agcatacatt tcgtgtcatt tggacggcag gtgatgccca 1080 gaaggagtgt gtgctcttaa aaggccgcca agagggctgg tgccgggact ccgccacgga 1140 tgagcagctc ttcaggtgtg agctgtcagt ggagaagtcc acggtgctac agtcggagct 1200 ggagtcctgt aaggagctgc aggagctgga gcctgagaat aaatggtgcc tactcaccat 1260 catcttgctg atgagggcgc tggaccccct gcagtacgag aaggagacac tgcagtactt 1320 ccaaaccctc aaggctgtgg acccaatgag ggcagcgtac ctggacgacc tgcgcagcaa 1380 gttcctgctg gagaacagcg ttctcaagat ggagtacgcg gaggtgcgcg tgctgcacct 1440 gggtcacaag gatctgacgg tgctctgcca tctggagcag ctgctcttgg tcactcacct 1500 tgacctgtca cacaatcgtc tccgagccct gccccctgcc ctggctgccc tgcgctgtct 1560 tgaggtgctg caggccaatg ataacgcaat cgaatccctg gatggtgtca ccaacctgcc 1620 ccggttgcag gagctcatcc tgtgtaacaa ccgcctccag cagcctgcgg tgctccagcc 1680 tctcacctcc tgccccaggc tgaccctcct caacctgcag ggcaacccgc tgtgccaggc 1740 ggagggcagc tcggagcacc tggccgagct gctgccttcg gttagcagca tcctcaccta 1800 agaggccctg cccccaccct tgccctttaa cttattggaa ctgaataaac aatgaagagg 1860 tccctg 1866 // |
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