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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT020749; SV 1; linear; mRNA; STD; MAM; 1452 BP.
XX
AC   BT020749;
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DT   17-FEB-2005 (Rel. 82, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 4)
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DE   Bos taurus 4-hydroxyphenylpyruvate dioxygenase (HPD), mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RP   1-1452
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
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RN   [2]
RP   1-1452
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
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RN   [3]
RP   1-1452
RA   Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W.,
RA   Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
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DR   Ensembl-Gn; ENSBTAG00000004175; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000005469; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1452
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="2BOV"
FT                   /clone="2BOV108D4; plate 108 row D column 4"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from testis, thymus,
FT                   semitendonosus muscle, longissimus muscle, pancreas,
FT                   adrenal, and endometrium."
FT                   /db_xref="taxon:9913"
FT   gene            1..1452
FT                   /gene="HPD"
FT                   /note="putative, similar to GeneID: 3242"
FT   CDS             24..1205
FT                   /codon_start=1
FT                   /gene="HPD"
FT                   /product="4-hydroxyphenylpyruvate dioxygenase"
FT                   /db_xref="GOA:Q5EA20"
FT                   /db_xref="InterPro:IPR004360"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5EA20"
FT                   /protein_id="AAX08766.1"
FT                   /translation="MTTYSDKGEKPERGRFLHFHSVTFWVGNAKQAASYYCSKLGFEPL
FT                   AYKGLETGSREVVSHVVKQGQIVFVFSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCD
FT                   YIVQKARERGAKIVREPWVEQDKLGKVKFAVLQTYGDTTHTLVEKMNYTGRFLPGFEAP
FT                   PFMDPQLSKLPSCSLEIIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYS
FT                   SLRSVVVANYEESIKMPINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTKDIITAIRHL
FT                   RERGVEFLAVPSTYYKQLREKLKMAKIRVKENIDILEELKILVDYDEKGYLLQIFTKPM
FT                   QDRPTLFLEVIQRHNHQGFGAGNFNSLFKAFEEEQDLRGNLTDMEPNGVVSGM"
XX
SQ   Sequence 1452 BP; 355 A; 410 C; 405 G; 282 T; 0 other;
     aggaagtgtg accacgatca atcatgacga cttacagcga caaaggagag aagcctgaaa        60
     gaggccgatt cctccacttt cactctgtga ccttctgggt tggcaatgcc aagcaggctg       120
     cgtcatatta ctgcagtaag ctgggctttg agcccctagc ctacaagggc ctggagaccg       180
     gttcccggga agtggtgagc catgtggtca agcaagggca gatcgtgttc gtcttctcct       240
     ctgccctcaa cccctggaac aaagagatgg gcgatcacct ggtgaaacac ggcgatggag       300
     tgaaggacat tgcgttcgag gtggaggact gtgactacat tgtgcagaaa gcccgggaac       360
     gaggcgccaa gattgtgcgg gagccttggg tagagcaaga taagcttggg aaggtgaagt       420
     ttgctgtgct acagacgtat ggggacacga cacacaccct ggtggagaag atgaactata       480
     ctggccggtt cctgcctgga ttcgaggcac caccattcat ggacccccaa ctttccaagc       540
     tgcccagctg cagtctcgag ataatcgatc acattgtggg aaaccagcct gatcaagaga       600
     tggtgtctgc ctctgaatgg tacctgaaga acttgcagtt ccaccgtttc tggtccgtgg       660
     atgacacgca ggtgcacacg gagtacagct ctctgcggtc cgtcgtggtg gccaattatg       720
     aggaatccat caagatgccc attaatgagc cagcaccggg caagaagaag tcccagatcc       780
     aggaatatgt ggactataac gggggcgctg gggtccagca cattgctctc aagaccaaag       840
     acatcatcac agcaattcgc cacttgagag agagaggcgt ggagtttttg gctgttccat       900
     ccacatacta caaacaactg cgggagaagc tcaagatggc caagatccgg gtgaaggaga       960
     atattgatat cctagaggag ctgaagatcc tggtagacta cgacgagaaa ggctacctcc      1020
     tgcagatttt caccaaaccc atgcaggacc ggcccacgct cttcctggaa gtcattcagc      1080
     gccacaatca ccagggtttt ggagccggca acttcaactc actgttcaag gccttcgagg      1140
     aggagcagga cctgcgaggc aacctcaccg acatggagcc caatggggtt gtgtccggca      1200
     tgtaggcgcc gcaggtccag caagagccac cgaggccccg cccaccttcg ggagcggggc      1260
     gcacggtgga tcacgctccc tcgccctgtg acccgcccac tccactggag ctgaagggag      1320
     ccctccttgc cccgcccacc atccgactcc gggacccctc ccacacacac taaaggctcc      1380
     gcccactact taccatgccc ctctttgggg cctctactct cctgcccttg ggtataaagc      1440
     aaagcagagt cc                                                          1452
//
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