 |
|
EBI DbfetchID BT020689; SV 1; linear; mRNA; STD; MAM; 1881 BP. XX AC BT020689; XX DT 17-FEB-2005 (Rel. 82, Created) DT 27-NOV-2008 (Rel. 97, Last updated, Version 4) XX DE Bos taurus Rab geranylgeranyltransferase, alpha subunit (RABGGTA), mRNA, DE complete cds. XX KW FLI_CDNA. XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RP 1-1881 RX DOI; 10.1101/gr.170101 RX PUBMED; 11282978. RA Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E., RA Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P., RA Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I., RA Karamycheva S., Liang F., Quackenbush J., Keele J.W.; RT "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries RT and construction of a gene index for cattle"; RL Genome Res. 11(4):626-630(2001). XX RN [2] RP 1-1881 RX DOI; 10.1186/1471-2164-6-166 RX PUBMED; 16305752. RA Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L., RA Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.; RT "Characterization of 954 bovine full-CDS cDNA sequences"; RL BMC Genomics 6:166-166(2005). XX RN [3] RP 1-1881 RA Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W., RA Snelling W.M., Weidmann R.T., Smith T.P.L.; RT ; RL Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases. RL Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center, RL P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA XX DR Ensembl-Gn; ENSBTAG00000018796; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000036474; Bos_taurus. XX CC Contact: Gregory P. Harhay at harhay@email.marc.usda.gov. XX FH Key Location/Qualifiers FH FT source 1..1881 FT /organism="Bos taurus" FT /lab_host="Escherichia coli DH10B" FT /mol_type="mRNA" FT /clone_lib="1BOV" FT /clone="1BOV37K13; plate 37 row K column 13" FT /tissue_type="pooled" FT /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI; FT Library made from pooled tissue from lymph node, ovary, FT fat, hypothalamus, and pituitary." FT /db_xref="taxon:9913" FT gene 1..1881 FT /gene="RABGGTA" FT /note="putative, similar to GeneID: 5875" FT CDS 104..1807 FT /codon_start=1 FT /gene="RABGGTA" FT /product="Rab geranylgeranyltransferase, alpha subunit" FT /db_xref="GOA:Q5EA80" FT /db_xref="InterPro:IPR009087" FT /db_xref="UniProtKB/Swiss-Prot:Q5EA80" FT /protein_id="AAX08706.1" FT /translation="MHGRLKVKTSEEQAEAKRLEREQKLKLYQAATQTVFQKRQAGELD FT ESVLELTSQILGANPDFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNP FT KSYGTWHHRCWLLSRLPEPNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEE FT LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTD FT PNDQSAWFYHRWLLGRADPQDALRCLHVSRDEACLTVSFSRPLLVGSGMETLLLMVDES FT PLAVEWRTPEGRNRPSHIWLCDLPATSLNDQLPQHTFRVIWTAGDAQKECVLLKGRQEG FT WCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLQ FT YEKETLQYFQTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAEVRVLHLGHKDLTVLCH FT LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQANDNAIESLDGVTNLPRLQELILCN FT NRLQQPAVLQPLTSCPRLTLLNLQGNPLCQAEGSSEHLAELLPSVSSILT" XX SQ Sequence 1881 BP; 367 A; 598 C; 546 G; 370 T; 0 other; gtggcgggcg ccgcagctcc gcgtccggct cgcctcctcc cagcacaggt ttcacgggca 60 ccggtggacc cttcttcccc tgccctgaat ctgagccagc accatgcacg ggcgcctgaa 120 ggtgaagaca tcggaagagc aagcggaagc caaaagacta gagcgggaac agaagctgaa 180 gctataccag gcagccaccc agactgtatt ccagaagcgc caggctggag aactggatga 240 atcagtgctg gaactgacaa gccagattct gggagccaac cctgactttg ccaccctctg 300 gaattgtcga cgagaggtgc tccagcagct ggaggtccag aagtcccccg aggagttggc 360 cactttggtg aaggcagaac tgggcttcct ggagagctgc ctgagggtga accccaagtc 420 ttatggtacc tggcaccacc gctgctggct gctgagccgc ctgccagagc ccaactgggc 480 ccgggagctg gagttgtgtg cccgcttcct cgaggttgat gagcggaact ttcactgctg 540 ggactaccgg cggtttgtgg ctgcacaggc agctgtgccc cctgcagagg agcttgcctt 600 cactgacagc ctcatcaccc gaaacttctc caactactcc tcctggcatt accgctcctg 660 cctcttgccc cagctgcacc ctcagccaga ctcaggaccc caggggcgcc tccctgagga 720 tgtgctgctc aaagagctgg agctggtgca gaacgccttc ttcactgatc ccaatgatca 780 gagtgcctgg ttctaccatc ggtggctcct gggacgagct gatccccagg atgccctgcg 840 ctgcctgcac gtgagccggg atgaggcttg cctgactgtc tccttctctc ggcccctcct 900 cgtgggctcc ggcatggaga ccttgctgct catggttgat gagtcacccc tggctgtgga 960 gtggaggacc ccagagggca ggaaccggcc tagccacatc tggctctgtg acctgcccgc 1020 cacctccctc aacgatcagt tgccccagca tacatttcgt gtcatttgga cggcaggtga 1080 tgcccagaag gagtgtgtgc tcttaaaagg ccgccaagag ggctggtgcc gggactccgc 1140 cacggatgag cagctcttca ggtgtgagct gtcagtggag aagtccacgg tgctacagtc 1200 ggagctggag tcctgtaagg agctgcagga gctggagcct gagaataaat ggtgcctact 1260 caccatcatc ttgctgatga gggcgctgga ccccctgcag tacgagaagg agacactgca 1320 gtacttccaa accctcaagg ctgtggaccc aatgagggca gcgtacctgg acgacctgcg 1380 cagcaagttc ctgctggaga acagcgttct caagatggag tacgcggagg tgcgcgtgct 1440 gcacctgggt cacaaggatc tgacggtgct ctgccatctg gagcagctgc tcttggtcac 1500 tcaccttgac ctgtcacaca atcgtctccg agccctgccc cctgccctgg ctgccctgcg 1560 ctgtcttgag gtgctgcagg ccaatgataa cgcaatcgaa tccctggatg gtgtcaccaa 1620 cctgccccgg ttgcaggagc tcatcctgtg taacaaccgc ctccagcagc ctgcggtgct 1680 ccagcctctc acctcctgcc ccaggctgac cctcctcaac ctgcagggca acccgctgtg 1740 ccaggcggag ggcagctcgg agcacctggc cgagctgctg ccttcggtta gcagcatcct 1800 cacctaagag gccctgcccc cacccttgcc ctttaactta ttggaactga ataaacaatg 1860 aagaggtccc tgagcgctgc t 1881 // |
|