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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT020634; SV 1; linear; mRNA; STD; MAM; 1438 BP.
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AC   BT020634;
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DT   17-FEB-2005 (Rel. 82, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 4)
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DE   Bos taurus protein geranylgeranyltransferase type I, beta subunit (PGGT1B),
DE   mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RP   1-1438
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
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RN   [2]
RP   1-1438
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
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RN   [3]
RP   1-1438
RA   Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W.,
RA   Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
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DR   Ensembl-Gn; ENSBTAG00000001895; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000002466; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000049558; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000052180; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1438
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="1BOV"
FT                   /clone="1BOV118A23; plate 118 row A column 23"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from lymph node, ovary,
FT                   fat, hypothalamus, and pituitary."
FT                   /db_xref="taxon:9913"
FT   gene            1..1438
FT                   /gene="PGGT1B"
FT                   /note="putative, similar to GeneID: 5229"
FT   CDS             17..1150
FT                   /codon_start=1
FT                   /gene="PGGT1B"
FT                   /product="protein geranylgeranyltransferase type I, beta
FT                   subunit"
FT                   /db_xref="GOA:Q5EAD5"
FT                   /db_xref="InterPro:IPR001330"
FT                   /db_xref="InterPro:IPR008930"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5EAD5"
FT                   /protein_id="AAX08651.1"
FT                   /translation="MAATEDERPTGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLET
FT                   SRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIP
FT                   FNPSKNPGTAHPYDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCA
FT                   VPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGS
FT                   TFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLK
FT                   LLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKV
FT                   HPALNVSTRTSERLRDLHQSWKTKDSKQCSENVHIST"
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SQ   Sequence 1438 BP; 380 A; 295 C; 356 G; 407 T; 0 other;
     tcgtttccgt agcagtatgg cggccacaga ggatgagcgg ccgacgggga gcggagaggg        60
     agagcggttg gatttcctac gagaccggca cgtgcggttc ttccagcgct gcctccaggt       120
     tttgcctgag cgctactctt cgctcgagac cagcaggttg actattgcat ttttcgcact       180
     ctctgggctg gatatgttgg actccttaga tgtggtgaac aaggatgata taatagagtg       240
     gatttactcc ctgcaggtcc ttcccacaga agacagatca aatctaaatc gctgtggttt       300
     ccgaggctct tcctacctgg gtattccatt caatccatca aagaatcccg gaactgctca       360
     tccttacgac agtggccaca tagcaatgac ctacactggc ctttcatgcc tagttattct       420
     tggagatgac ctaagtcggg taaataaaga agcttgctta gcaggcttga gagcccttca       480
     gctagaagat ggaagttttt gtgcagtacc tgaaggcagt gaaaatgaca tgcgatttgt       540
     atactgtgct tcctgtatct gctatatgct caacaactgg tctggcatgg atatgaaaaa       600
     ggctatcaac tatattagaa gaagtatgtc ctatgacaat gggttggcac agggagcagg       660
     acttgaatct catggaggat caactttttg tggcattgca tcactgtgcc tgatgggtaa       720
     actagaagaa gttttttcag aaaaagaact gaaccggata aaaaggtggt gcataatgag       780
     acaacagaac ggttatcatg gaaggcctaa taagcctgtt gacacctgtt actctttttg       840
     ggtgggagca actctaaagc ttctgaaaat tttccagtat actaactttg agaaaaatag       900
     aaattacatc ttatcaactc aagatcgcct cgttggggga tttgccaagt ggccggatag       960
     tcatccagat gctttgcatg catactttgg aatttgtggc ctgtcactaa tggaggaaag      1020
     cggcatttgt aaggttcatc ctgccctgaa cgtaagcaca cggacttctg agcgccttcg      1080
     agatctccat cagagctgga aaaccaagga ctctaaacag tgctcagaga atgtgcacat      1140
     ctccacatga ctaactttag ccgggggcgg cggggagggt ttgtagccta actgtagctc      1200
     aaggttaaaa gccatggata accacatgtg ctcttttttt taagaggtag tcttacaatc      1260
     gaatcttgtg ccgatgtcac tttgggatat ggtcttgagc cagtaacctt tgtactaggt      1320
     ttcaagaaaa tctttgttga agtttgaacc acagtggact tcgtcgtggt tcttaaatgt      1380
     ttatactgta tttctaagtt ctttgaggcc aattaactgt atgtatgtag gttatctt        1438
//
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