EBI Dbfetch

ID   BT010422; SV 1; linear; mRNA; STD; PLN; 822 BP.
XX
AC   BT010422;
XX
DT   28-AUG-2003 (Rel. 77, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana At3g54420 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-822
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-822
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (23-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Shinn,P., Chen,H.,
CC   Cheuk,R., Kim,C.J.,  Bowser,L., Dale,J.M., Hsuan,V.W., Jones,T.,
CC   Karlin-Neumann,G., Lam,B., Lin,J., Miranda,M., Nguyen,M.,
CC   Palm,C.J., Quach,H.L., Southwick,A., Toriumi,M., Wallender,E.K.,
CC   Wong,C., Wu,H.C., Yamada,K., Yu,G., Yuan,S., Davis,R.W.,
CC   Theologis,A., and Ecker,J.R.
CC   Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..822
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U61782"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..822
FT                   /codon_start=1
FT                   /product="At3g54420"
FT                   /note="glycosyl hydrolase family 19 (class IVchitinase)"
FT                   /db_xref="GOA:Q9M2U5"
FT                   /db_xref="HSSP:1MMC"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M2U5"
FT                   /protein_id="AAQ62423.1"
FT                   /translation="MLTPTISKSISLVTILLVLQAFSNTTKAQNCGCSSELCCSQFGFC
FT                   GNTSDYCGVGCQQGPCFAPPPANGVSVAEIVTQEFFNGIISQAASSCAGNRFYSRGAFL
FT                   EALDSYSRFGRVGSTDDSRREIAAFFAHVTHETGHFCYIEEIDGASKDYCDENATQYPC
FT                   NPNKGYYGRGPIQLSWNFNYGPAGTAIGFDGLNAPETVATDPVISFKTALWYWTNRVQP
FT                   VISQGFGATIRAINGALECDGANTATVQARVRYYTDYCRQLGVDPGNNLTC"
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SQ   Sequence 822 BP; 208 A; 201 C; 187 G; 226 T; 0 other;
     atgttgactc ccaccatttc taaatccatc tctttagtaa ccattctatt agttctacaa        60
     gctttctcta acacaacaaa ggctcaaaat tgcggttgtt cgtcagagct atgttgtagt       120
     cagtttggct tttgcggtaa cacttcagac tattgtggtg taggttgcca acaaggacct       180
     tgttttgctc ctccccctgc aaatggtgtc tctgtggctg agattgtaac gcaagaattc       240
     ttcaatggaa tcatcagtca agccgcgtct agttgcgccg gcaatagatt ttacagtcgg       300
     ggagcttttc ttgaggcctt agactcatat tctcgtttcg gtagagttgg atcgaccgac       360
     gactctaggc gtgagattgc agcgttcttt gctcatgtca cacatgaaac aggacatttc       420
     tgctacatag aagagataga cggagcctca aaggattact gcgacgagaa tgcaacacaa       480
     tatccatgca atcctaacaa aggctactac ggccgcggac cgatccaact ctcttggaat       540
     ttcaactacg ggccagccgg gacagcaatt ggtttcgacg gcctgaatgc accggaaaca       600
     gtagccacgg atccagtcat atccttcaaa accgccttgt ggtactggac caatagggtt       660
     cagcctgtta tctctcaagg ttttggtgca acaatccgtg ccattaacgg tgctttggag       720
     tgtgacgggg ccaacacagc caccgttcaa gctagagttc gttactacac ggattattgt       780
     cgtcaacttg gcgttgatcc tggaaacaac ctcacttgct aa                          822
//