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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT010376; SV 1; linear; mRNA; STD; PLN; 1518 BP.
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AC   BT010376;
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DT   24-AUG-2003 (Rel. 77, Created)
DT   24-AUG-2003 (Rel. 77, Last updated, Version 1)
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DE   Arabidopsis thaliana At3g11420 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1518
RA   Kim C.J., Chen H., Cheuk R., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-1518
RA   Kim C.J., Chen H., Cheuk R., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (22-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Kim,C.J.,
CC   Chen,H., Cheuk,R., Shinn,P., Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Jones,T., Karlin-Neumann,G., Lam,B., Lee,J.M., Lin,J.,
CC   Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J., Quach,H.L.,
CC   Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C., Yamada,K.,
CC   Yu,G., Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Kim,C.J. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1518
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U16899"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1518
FT                   /codon_start=1
FT                   /product="At3g11420"
FT                   /note="unknown protein"
FT                   /db_xref="InterPro:IPR006740"
FT                   /db_xref="UniProtKB/TrEMBL:Q9CAY4"
FT                   /protein_id="AAQ56819.1"
FT                   /translation="MKANRGGGEHGQHEALKLSSFFFMPERPRDYLVLFTRFSVLTCLI
FT                   VSVSLVLRATFLSPSARDYSTTYGLKLTAVPQKAIALPPSASVGPTNISHIFFSIAGAA
FT                   ETWIDRSQYISLWWRNTTRGFVWLDEPVKIPENHSDVRFSIPTRVSDPGWTRFKFSSSR
FT                   AAVRIARIIWDSYRLNLPNVRWFVMGDDDTVFFTENLVKVLSKYDHEQMWYIGGNSESV
FT                   EQDVMHAYDMAFGGGGFALSRPLAARLAAAMDDCLQRYFYFYGSDQRIASCISEIGVPF
FT                   TEERGFHQLDIRGDPYGFLAAHPLAPLVSLHHLVYLDPMFPNKNPIESLQTLMKPYTLD
FT                   PNRILQQINCHDRKRQWSISISWGYTIQIYTYFLTATELTTPLQTFKTWRSSSDGPFVF
FT                   NTRPLKPDPCERPVTYFMDGAEDVRDSGTKTWYSIGDKNYGHCGKIEHTRLTKVKRILV
FT                   TSMKTDPEYWNKAPRRQCCEVMEGKVGKRKEKEMLLRIRKCRSLEKI"
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SQ   Sequence 1518 BP; 385 A; 381 C; 362 G; 390 T; 0 other;
     atgaaagcaa atcgcggcgg cggagagcac ggccaacacg aggctctaaa gctttccagt        60
     ttcttcttca tgccggagcg gccacgtgat tacctcgtgc ttttcacacg tttctccgtc       120
     ctcacgtgcc tcatcgtctc cgtatctctt gttctccgcg ccactttttt atccccttcc       180
     gctcgagact attccaccac ctacggtctc aaattaaccg ccgtacctca aaaagccata       240
     gctctccctc cgtccgcatc cgtcggacca accaatatct cccatatctt cttctctatc       300
     gccggagcag ctgagacatg gatcgatcgg agccagtaca tctccttatg gtggcgaaac       360
     acgacacgtg gcttcgtctg gctcgatgaa ccggtgaaaa tccctgaaaa tcactccgat       420
     gtcagattct cgatcccgac tcgagtttct gatccaggct ggactcgatt caaattctcc       480
     agctcaagag ccgcggttcg aatcgctcgt ataatctggg atagttatcg gttaaatcta       540
     ccaaatgtcc ggtggttcgt catgggagat gacgataccg tcttcttcac cgagaatctc       600
     gtcaaggttc tctcaaagta cgaccacgag cagatgtggt acatcggagg aaactcagag       660
     agcgtcgagc aagacgtgat gcacgcgtac gatatggcgt ttggcggcgg tggtttcgct       720
     ctgagccgtc cattagcggc gcgtttggcc gccgcgatgg atgattgtct ccaacgttat       780
     ttctattttt acggttctga tcagagaatc gcgtcttgca tcagcgagat cggcgttccg       840
     ttcaccgaag aacgcggttt tcatcagctt gacataagag gagatccata cgggtttcta       900
     gcggcgcatc cattggcacc gcttgtatcg ttgcatcacc ttgtttactt agacccaatg       960
     ttccctaaca aaaacccgat cgagtcgtta cagaccctaa tgaaacctta taccttagac      1020
     ccgaatcgaa tactccaaca gattaattgt catgatcgca aacgtcaatg gtctatatcc      1080
     atctcttggg gatacaccat tcagatatac acttacttct tgactgctac ggagctgact      1140
     acgccgttgc agaccttcaa aacttggcgg tcttccagcg atggaccttt cgtgtttaac      1200
     actcggccct tgaaacctga cccctgtgag cgtccggtca cttatttcat ggatggtgcc      1260
     gaggatgtac gggatagtgg gacgaaaact tggtatagca taggggataa gaactatggt      1320
     cattgcggaa agattgagca tactcgatta actaaagtga agaggatatt ggtgacttca      1380
     atgaagacgg atcctgagta ttggaacaag gcaccgagga gacagtgttg tgaggtgatg      1440
     gaaggaaaag taggaaaaag aaaagagaaa gaaatgttgt taaggattag aaaatgcaga      1500
     tctttggaga agatataa                                                    1518
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