EBI Dbfetch

ID   BT009726; SV 1; linear; mRNA; STD; PLN; 795 BP.
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AC   BT009726;
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DT   17-JUL-2003 (Rel. 76, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana At2g43590 gene, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-795
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-795
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (16-JUL-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Cheuk,R.,
CC   Chen,H., Kim,C.J., Shinn,P., Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Hsuan,V.W., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC   Yamada,K., Yu,G., Yuan,S., Davis,R.W.,  Theologis,A., and
CC   Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..795
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="U23470"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..795
FT                   /codon_start=1
FT                   /product="At2g43590"
FT                   /note="glycosyl hydrolase family 19 (chitinase)"
FT                   /db_xref="GOA:O24658"
FT                   /db_xref="HSSP:1MMC"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:O24658"
FT                   /protein_id="AAP88360.1"
FT                   /translation="MAFTKISLVLLLCLLGFFSETVKSQNCGCAPNLCCSQFGYCGTDD
FT                   AYCGVGCRSGPCRGSGTPTGGSVGSIVTQGFFNNIINQAGNGCAGKRFYTRDSFVNAAN
FT                   TFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGATRNYCQSSNTQYPCAPGKGYFG
FT                   RGPIQLSWNYNYGACGQSLGLDLLRQPELVGSNPTVAFRTGLWFWMNSVRPVLNQGFGA
FT                   TIRAINGMECNGGNSGAVNARIGYYRDYCGQLGVDPGPNLSC"
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SQ   Sequence 795 BP; 197 A; 188 C; 194 G; 216 T; 0 other;
     atggctttca caaaaatctc cttagtcctt cttctctgcc tcttaggttt cttttctgaa        60
     actgtcaagt ctcaaaactg cggttgcgct ccaaacctct gttgcagtca gttcggttac       120
     tgtggtaccg acgatgcata ctgcggtgtt ggatgccgat caggtccttg tagaggtagt       180
     ggaaccccga ccggagggtc ggtcggtagc attgtgacac aaggtttctt taacaatatt       240
     atcaaccaag ctggtaatgg ttgcgcgggg aaaagattct acacccgtga ctctttcgtt       300
     aacgccgcta atactttccc caactttgcc aattctgtta ccagacgtga aattgctacc       360
     atgtttgctc atttcactca cgagaccgga catttctgct acatagaaga gattaacgga       420
     gcaacacgta actactgcca gagcagcaac acacaatacc catgtgcacc gggaaaaggc       480
     tacttcggtc gtggtccgat ccaactatca tggaactaca actacggagc gtgtggtcaa       540
     agtctcggtc ttgaccttct acgccagccc gaacttgtgg gtagcaaccc aactgtagct       600
     ttcaggacgg gtttgtggtt ttggatgaat agcgtaaggc cggttctgaa ccaagggttt       660
     ggagccacca ttagagctat taatggaatg gaatgtaacg gtggtaattc cggtgcagtc       720
     aacgcaagga ttggatacta tagagactat tgtggacagc ttggtgtgga ccctggtcct       780
     aaccttagtt gctaa                                                        795
//