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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT008762; SV 1; linear; mRNA; STD; PLN; 1398 BP.
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AC   BT008762;
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DT   05-JUN-2003 (Rel. 76, Created)
DT   05-JUN-2003 (Rel. 76, Last updated, Version 1)
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DE   Arabidopsis thaliana At1g16570 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1398
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-1398
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (04-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Shinn,P.,
CC   Chen,H., Cheuk,R., Kim,C.J.,  Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Jones,T., Karlin-Neumann,G., Lam,B., Lee,J.M., Lin,J.,
CC   Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J., Quach,H.L.,
CC   Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C., Yamada,K.,
CC   Yu,G., Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1398
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /mol_type="mRNA"
FT                   /clone="U16251"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1398
FT                   /codon_start=1
FT                   /product="At1g16570"
FT                   /note="unknown protein"
FT                   /db_xref="GOA:Q8L7M0"
FT                   /db_xref="InterPro:IPR001296"
FT                   /db_xref="UniProtKB/TrEMBL:Q8L7M0"
FT                   /protein_id="AAP49524.1"
FT                   /translation="MGKRGRACVVVLGDLGRSPRMQYHALSLARQASFQVDIVAYGGSI
FT                   PHEAVLNHPSIHIHTMAQPRFIQYFPKILYPVTLLLKAFIQFTMLLWFLFVKVPAPDIF
FT                   LVQNPPSVPTLIAVKWASSWRRAAFVVDWHNFGYTLLALSLGRNNLLVSLYRWSENHYG
FT                   KMATGSLCVTKAMQHELDQNWGVRAKVLYDQPPEFFRPALLEERHELFCRVRKDLCHPI
FT                   GVYDFISRELENQELNETLFTTKFNADISLKQNRPALVVSSTSWTPDENFGILLEAAVM
FT                   YDRRVAARSKGSETAEISEEQHHYPNLLFIITGKGPEKEMYEEKIKRLNLRHVAFRTMW
FT                   LAAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCSVSYSCIQELVKDGKN
FT                   GLLFSSSSELADQLLILFKGFPGNCDALMSLKAGAMETGSSGRWATEWEDCAKPLITQV
FT                   VSQIADS"
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SQ   Sequence 1398 BP; 367 A; 280 C; 324 G; 427 T; 0 other;
     atggggaaaa gaggaagggc ttgtgtagtg gtacttggag atcttggtcg aagtcctcgg        60
     atgcaatatc acgctctttc tcttgctcgt caggcatcat ttcaagtgga cattgttgca       120
     tatggaggtt ctatacccca tgaagctgtt ctaaatcacc catcaatcca catccatacc       180
     atggcgcagc ctcgattcat tcagtacttt ccaaagatac tttatcctgt aactctcttg       240
     ctcaaggcat ttattcagtt tacaatgctt ctctggtttc ttttcgttaa agtaccagcg       300
     cctgacattt tcttggtcca gaatcctcct tccgtcccaa ctctaattgc tgttaagtgg       360
     gcgagttcat ggagacgtgc agcgtttgtt gtagattggc ataattttgg atatacgttg       420
     ttggcattgt ctttaggaag aaacaatttg cttgtatcct tataccgctg gtctgagaat       480
     cattatggaa agatggcaac aggttcgcta tgtgtcacaa aagcaatgca acatgaactg       540
     gatcagaatt ggggtgtgag agccaaagtg ttatatgatc agcctcctga gtttttccgt       600
     cccgctttgc ttgaagaaag gcatgagttg ttttgccgag tgaggaagga tctttgccat       660
     ccaattggtg tctatgattt cattagtaga gagttggaaa accaagagct taatgaaacc       720
     ctttttacta ccaaatttaa tgctgacatc tcgctgaagc aaaacagacc agctcttgtt       780
     gtgagtagta caagctggac ccctgatgaa aattttggta tcctactgga agctgcagtg       840
     atgtatgatc ggcgtgtggc tgcaagatca aaaggaagtg aaacagctga aatttcagaa       900
     gagcaacacc attatcccaa tttgttgttc atcattacag gtaaaggacc tgaaaaggag       960
     atgtacgagg agaaaatcaa acgattaaac cttagacatg tggcattccg tacaatgtgg      1020
     ctcgcagctg aagattaccc attgctttta ggttctgcag atctcggtgt ctgcttacac      1080
     acttcctcgt cgggtttaga ccttcccatg aaggttgttg atatgtttgg atgtggcctc      1140
     ccagtttgct cggtttccta ctcatgcatt caagaactcg ttaaagatgg gaagaacgga      1200
     cttttgtttt catcttcatc agaattagca gatcaattat tgattctctt caagggtttt      1260
     ccagggaact gtgatgcact aatgtcgctt aaagcgggtg caatggagac tggttcttcg      1320
     ggtcgatggg ctacagagtg ggaagattgt gcaaaacctt taatcactca ggtcgtgtct      1380
     caaattgcag attcatga                                                    1398
//
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