EBI Dbfetch

ID   BT008497; SV 1; linear; mRNA; STD; PLN; 1233 BP.
XX
AC   BT008497;
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DT   16-MAY-2003 (Rel. 75, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana At5g08380 gene, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1233
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA   Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1233
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA   Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (15-MAY-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Cheuk,R.,
CC   Chen,H., Kim,C.J., Shinn,P., Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Hsuan,V.W., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC   Yamada,K., Yu,G., Yuan,S., Davis,R.W.,  Theologis,A., and
CC   Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1233
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U24083"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1233
FT                   /codon_start=1
FT                   /product="At5g08380"
FT                   /note="alpha-galactosidase-like protein"
FT                   /db_xref="GOA:Q8RWB9"
FT                   /db_xref="HSSP:1UAS"
FT                   /db_xref="InterPro:IPR000111"
FT                   /db_xref="InterPro:IPR002241"
FT                   /db_xref="InterPro:IPR013785"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="UniProtKB/TrEMBL:Q8RWB9"
FT                   /protein_id="AAP37856.1"
FT                   /translation="MSRRAMVIKMPILMILISSMVMTMVESSRSVNNGHDDSEILRRHL
FT                   LTNGLGVTPPMGWNSWNHFSCNIDEKMIKETANALVTTGLSKLGYNYVNIDDCWAEISR
FT                   DSKGSLVPKKSTFPSGIKAVADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGYEEHDAKT
FT                   FAEWGIDYLKYDNCNSDGSKPTVRYPVMTRALMKSGRPIFHSLCEWGDMHPALWGSPVG
FT                   NSWRTTNDIKDTWLSMISIADMNEVYAEHARPGGWNDPDMLEVGNGGMTKDEYIVHFSI
FT                   WAISKAPLLLGCDIRNMTKETMEIVANKEVIAINQDPHGVQAKKVRMEGDLEVWAGPLS
FT                   GYRVALLLLNRGPSRTSITALWEDIEIPANSIVEARDLWEHQTLKQKFVGNLTATVDSH
FT                   ACKLYVLKPVA"
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SQ   Sequence 1233 BP; 360 A; 243 C; 307 G; 323 T; 0 other;
     atgtcgagac gagcaatggt gataaagatg ccaatactta tgatactgat ttcatcaatg        60
     gtgatgacga tggtcgagtc ttcgagatca gttaataatg gtcatgacga ttctgagatc       120
     ttacgaagac acttgctcac taatggcctc ggagtcactc ctcccatggg gtggaatagc       180
     tggaaccatt ttagctgcaa catagatgaa aaaatgatca aagaaactgc taatgctttg       240
     gttaccactg gcctctctaa gcttggctac aactatgtta acatcgatga ttgctgggct       300
     gaaatttctc gtgacagcaa gggaagtctg gtgccaaaga agtcaacttt cccttctgga       360
     attaaagcgg ttgcggatta tgttcacagt aaaggcctta agcttgggat ttactcagat       420
     gccgggtatt tcacttgcag taaaaccatg ccaggttctt taggctacga ggagcatgat       480
     gccaagacat ttgcagaatg gggaattgat tacttgaagt atgacaactg caacagcgat       540
     ggctctaaac ctactgtcag gtatccagtg atgactcgag ctctgatgaa atctggccgc       600
     cccatctttc actcattgtg tgaatgggga gatatgcatc cagctctatg gggatctcca       660
     gtaggcaaca gttggagaac cactaatgac attaaagata cttggcttag tatgatctca       720
     atagcagaca tgaatgaagt ctacgctgag catgcaagac ctggtggctg gaacgacccg       780
     gatatgcttg aagtgggaaa tggagggatg acaaaagacg agtacatagt ccatttcagc       840
     atatgggcaa tctcaaaggc tcctcttcta cttggttgtg acataagaaa catgaccaaa       900
     gaaacaatgg agattgtcgc caacaaggaa gtcattgcta ttaatcaaga tccacatggt       960
     gttcaggcca agaaagttag aatggaaggc gatctcgagg tttgggcagg accattgtca      1020
     ggttacagag tagctttgct tctattgaac cgtggaccat cgcgaacttc gattactgct      1080
     ctttgggagg atattgagat ccctgcaaat agcatcgttg aagccagaga tctatgggag      1140
     caccagacat tgaagcaaaa gtttgtgggg aacttgacag caacagtgga ttctcatgcg      1200
     tgtaagttgt atgttctcaa acctgttgcc tga                                   1233
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