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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT006493; SV 1; linear; mRNA; STD; PLN; 1344 BP.
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AC   BT006493;
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DT   26-APR-2003 (Rel. 75, Created)
DT   26-APR-2003 (Rel. 75, Last updated, Version 1)
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DE   Arabidopsis thaliana At5g39990 gene, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1344
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA   Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-1344
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA   Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (25-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Cheuk,R.,
CC   Chen,H., Kim,C.J., Shinn,P., Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Hsuan,V.W., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC   Yamada,K., Yu,G., Yuan,S., Davis,R.W.,  Theologis,A., and
CC   Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1344
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U22641"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1344
FT                   /codon_start=1
FT                   /product="At5g39990"
FT                   /note="N-acetylglucosaminyltransferase family
FT                   (Core-2/I-Branching enzyme family)"
FT                   /db_xref="GOA:Q9FLD7"
FT                   /db_xref="InterPro:IPR003406"
FT                   /db_xref="UniProtKB/TrEMBL:Q9FLD7"
FT                   /protein_id="AAP21301.1"
FT                   /translation="MKKLRSYYSNVRHHQNHHHHHHHHSNIVSSERKWIFFPLLIGSIF
FT                   ALFLLFLTTTLTSPTGGVRFLPFTRPVLLTGSGSSAFVESKIKPQQISSLPSPPRFAYL
FT                   ISGSAGDGKSLRRTLLALYHPNNRYVVHLDRESSREEREELHGYIKNSSLFRRFMNVHM
FT                   IEKANLVTYRGPTMVANTLHAAAILLREGADWDWFINLSSSDYPLVTQDDLLHIFSHLP
FT                   RDLNFIDHTSNIGWKASQRAKPVIIDPGLYLNKKSDVFWVTQRRSIPTAFKLFTGSAWM
FT                   ALSRPFVDYCIWGWDNLPRTVLMYYSNFLSSPEGYFHTVLCNAEEFRNTTVNSDLHFIS
FT                   WDNPPKQHPHHLTLTDMTKMVNSNAPFARKFRREDPVLDKIDDELLNRGPGMITPGGWC
FT                   IGSHENGSDPCAVIGDTDVIRPGPGARRLENLVTSLLSTENFRSKQCK"
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SQ   Sequence 1344 BP; 358 A; 300 C; 281 G; 405 T; 0 other;
     atgaagaaat tgagaagcta ttactcaaat gtgagacatc atcagaatca ccatcatcat        60
     caccatcatc atagcaacat tgtttcttca gagaggaaat ggatattttt ccctctattg       120
     attggttcaa tcttcgcttt gttcttactc ttcctcacaa caaccctaac ttcaccaacc       180
     ggaggagtcc gatttctccc ttttacccga cccgttttgt taaccggatc tggttcatca       240
     gctttcgttg aatccaaaat caaacctcaa caaatctcat cactcccgtc gccaccgcgt       300
     tttgcttact tgatttctgg atccgccggc gacgggaaat ctctccggcg aactcttttg       360
     gctctttacc atccgaataa tcggtatgtt gttcatttag atagagaatc ttcgcgtgag       420
     gagagagagg agcttcatgg atatatcaaa aactcgtctt tgtttcgaag gtttatgaat       480
     gttcatatga ttgagaaagc taatcttgtc acgtatcgtg gacctactat ggttgccaat       540
     acacttcacg ccgctgcgat tttgcttaga gaaggagctg attgggattg gtttatcaat       600
     cttagctctt ctgactatcc tttagtgact caagatgatt tgttgcatat cttttcgcat       660
     ttgccgcggg atttgaactt cattgatcat actagtaaca ttggatggaa agcatcacaa       720
     agagcaaaac cggtgattat agatcctgga ctgtatttga acaagaaatc tgatgttttt       780
     tgggttacgc aaagacggag catcccaaca gcattcaagc ttttcacagg ctctgcttgg       840
     atggcgttat ctcggccatt cgtcgactat tgtatatggg gttgggataa tctacctcgt       900
     acggtcttaa tgtattactc gaattttctc tcttctccag aaggatattt tcacactgtt       960
     ctctgcaacg ctgaggaatt cagaaacaca acggtaaata gcgacctgca cttcatatcg      1020
     tgggacaatc cgcctaagca gcatccacac catctcactc ttacagacat gaccaaaatg      1080
     gtaaatagca atgccccgtt tgctagaaag ttcagaagag aagatcctgt ccttgacaag      1140
     atcgatgatg agctccttaa cagaggtcct gggatgataa cacctggcgg ttggtgcatt      1200
     ggaagccatg agaatgggag tgacccttgt gctgttattg gtgatactga tgttatcagg      1260
     cctggtccag gcgctagacg gctcgagaat ctggtaactt cgttattatc cactgagaat      1320
     ttccgatcaa aacagtgtaa gtga                                             1344
//
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