EBI Dbfetch

ID   BT006482; SV 1; linear; mRNA; STD; PLN; 2070 BP.
XX
AC   BT006482;
XX
DT   26-APR-2003 (Rel. 75, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabidopsis thaliana At5g45300 gene, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2070
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA   Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
XX
RN   [2]
RP   1-2070
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA   Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (25-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Cheuk,R.,
CC   Chen,H., Kim,C.J., Shinn,P., Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Hsuan,V.W., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC   Yamada,K., Yu,G., Yuan,S., Davis,R.W.,  Theologis,A., and
CC   Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2070
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U60077"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..2070
FT                   /codon_start=1
FT                   /product="At5g45300"
FT                   /note="putative beta-amylase"
FT                   /db_xref="GOA:Q9FH80"
FT                   /db_xref="HSSP:1FA2"
FT                   /db_xref="InterPro:IPR008540"
FT                   /db_xref="UniProtKB/TrEMBL:Q9FH80"
FT                   /protein_id="AAP21290.1"
FT                   /translation="MHTLNNTITTTTGSQDPNLDPIPDPDQFPNRNRNQPQSRRPRGFA
FT                   AAAAAASIAPTENDVNNGNIAGIGGGEGSSGGGGGGGGKGKREREKEKERTKLRERHRR
FT                   AITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVEADGTTYRQSQQPNHVVQFP
FT                   TRSIESPLSSSTLKNCAKAAIESQQHSVLRNDEKLAPVSLDSIGIAESDHPGNGRYTSV
FT                   SPITSVGCLEANQLIQDVHSAEQCNDFTESFYVPVYAMLPVGIIDNFGQLVDPEGVRQE
FT                   LSYMKSLNVDGVVIDCWWGIVEGWNPQKYVWSGYRELFNLIRDFKLKLQVVMAFHEYGG
FT                   NASGNVMISLPQWVLKIGKDNPDIFFTDREGRRSFECLNWSIDKERVLHGRTGIEVYFD
FT                   FMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQL
FT                   SLQKEAKSRGFTFWGKGPENAGQYSSHPHETVFFQERGEYDSYYGRFFLNWYSQLLIGH
FT                   AENVLSLANLAFEETKIIVKIPAIYWSYKTASHAAELTAGYYNPSNRDGYSLVFETLKK
FT                   YSVTVKFVCPGPQMSPNAHEEALADPEGLSWQVINAAWDKGLQIGGENAITCFDRDGCM
FT                   RLIDIAKPRNHPDGYHFSFFTYRQPSPLVQGSTCFPDLDYFIKRMHGDIRDKQF"
XX
SQ   Sequence 2070 BP; 592 A; 406 C; 520 G; 552 T; 0 other;
     atgcatactc tcaacaacac catcaccacc accaccggtt cgcaagatcc gaatctcgac        60
     ccaattccag acccggatca atttcccaac cggaaccgca accaaccaca atctcgccgc       120
     cctcgcggat tcgccgctgc agcagcagca gcgtcgatag ctccaacgga aaacgatgta       180
     aacaacggaa acatcgccgg aatcggcggt ggagaaggaa gcagcggcgg cggaggaggt       240
     ggaggaggga aagggaagag agagagggag aaggaaaaag agagaacgaa gcttagagaa       300
     agacatagac gagcaatcac tagtagaatg ctcgccggat taagacagta cggtaatttt       360
     ccgttaccgg cgcgtgctga tatgaatgac gtaatcgctg ctttggctcg tgaagctggt       420
     tggagtgttg aagccgatgg tactacttat cggcaatcac agcaaccaaa tcatgtggta       480
     cagtttccga cgagatctat tgagagtcca ctttcttcta gtacattgaa gaactgtgct       540
     aaggctgcaa ttgaatctca gcagcattca gttcttagga acgatgagaa acttgctcct       600
     gtgtctcttg attctattgg tattgccgag agtgatcatc ccgggaatgg aaggtatact       660
     agtgttagtc ctatcacctc cgttggatgc ttggaagcca atcagcttat acaagatgtt       720
     cattccgcag agcaatgtaa tgacttcaca gagagctttt atgtccctgt gtacgccatg       780
     cttccagttg gcattataga caactttggc cagttggttg atcctgaagg tgtaagacaa       840
     gaattaagtt acatgaagtc attaaatgtc gatggagtag taatagattg ttggtgggga       900
     atagttgaag gatggaaccc tcagaaatat gtatggtctg gctataggga gctctttaac       960
     cttatcagag acttcaaact taagctacag gtggtgatgg catttcatga gtatggaggg      1020
     aatgcatctg ggaatgtgat gatttcgttg ccacagtggg tgttgaagat tgggaaagac      1080
     aatccagaca tttttttcac tgatcgtgaa ggaagaagaa gtttcgagtg tttgaattgg      1140
     agcattgaca aggaacgggt attgcatgga cgaactggta tagaggtcta ttttgatttt      1200
     atgagaagct tccggtcaga gtttgatgac ttgtttgtgg aaggactaat tactgcggtt      1260
     gagattggtc ttggagcttc tggtgaacta aagtacccat ctttcccaga aaggatgggt      1320
     tggatttatc ccggtatcgg tgagtttcag tgttatgaca aatattcgca attgagtctg      1380
     caaaaggaag caaagtcacg aggattcact ttctggggta aaggaccaga gaatgctggt      1440
     caatacagtt ctcatccaca tgaaactgtg ttcttccaag aaagaggtga atatgacagc      1500
     tattatggcc gcttcttctt aaattggtac tcacaattgc taattggtca tgctgagaat      1560
     gttctgtctc ttgcaaatct cgcatttgag gagacgaaga ttattgtcaa gataccggca      1620
     atatactggt catacaagac agctagtcat gctgctgaat taactgcagg atactacaac      1680
     ccttcaaacc gtgatgggta ctctcttgtt ttcgaaactc tgaagaaata ttccgtgact      1740
     gtgaagtttg tgtgccctgg gccacaaatg tctcccaatg cgcatgaaga agcattagct      1800
     gatccagaag gtttaagttg gcaggtgatc aacgcagctt gggataaggg acttcaaatc      1860
     ggtggagaga atgcgattac ttgtttcgac agagatggtt gtatgagatt aatcgatata      1920
     gctaaaccaa gaaaccatcc agatggctat cacttctcct tcttcacata tcgtcaacct      1980
     tctcctctgg ttcaaggatc tacttgcttt ccagatttgg actacttcat taaacgcatg      2040
     catggcgaca taagagataa acagttttag                                       2070
//