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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT006471; SV 1; linear; mRNA; STD; PLN; 1500 BP.
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AC   BT006471;
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DT   26-APR-2003 (Rel. 75, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 2)
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DE   Arabidopsis thaliana At3g03650 gene, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1500
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA   Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-1500
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M.,
RA   Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M.,
RA   Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (25-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   The discrepancy does not affect the protein sequence.
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Cheuk,R.,
CC   Chen,H., Kim,C.J., Shinn,P., Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Hsuan,V.W., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC   Yamada,K., Yu,G., Yuan,S., Davis,R.W.,  Theologis,A., and
CC   Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1500
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U23588"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1500
FT                   /codon_start=1
FT                   /product="At3g03650"
FT                   /note="Exostosin family"
FT                   /db_xref="GOA:Q9SS65"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9SS65"
FT                   /protein_id="AAP21279.1"
FT                   /translation="MGEKTNSRYLGVIITRKSIIFLFISIITVLSWFFIFSSTNPNRVL
FT                   DHISVSESTDVPLIIIKNSNSSPQNNAPKPQNREGAETEEPIKENRGGTKTESSMNQNR
FT                   GETLRCIQRVSPSPRPLKVYMYDMSPEFHFGLLGWKPERNGVVWPDIRVNVPHHPGGLN
FT                   LQHSVEYWLTLDLLFSELPEDSRSSRAAIRVKNSSEADVVFVPFFSSLSYNRFSKVNQK
FT                   QKKSQDKELQENVVKYVTSQKEWKTSGGKDHVIMAHHPNSMSTARHKLFPAMFVVADFG
FT                   RYSPHVANVDKDIVAPYKHLVPSYVNDTSGFDGRPILLYFQGAIYRKAGGFVRQELYNL
FT                   LKEEKDVHFSFGSVRNHGISKAGEGMRSSKFCLNIAGDTPSSNRLFDAIASHCIPVIIS
FT                   DDIELPYEDVLNYNEFCLFVRSSDALKKGFLMGLVRSIGREEYNKMWLRLKEVERYFDL
FT                   RFPVKDDEGDYAVQMIWKAVARKAPLVKMKVHRFQRFTRPF"
FT   misc_difference 387
FT                   /replace="t"
FT                   /note="compared to genome"
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SQ   Sequence 1500 BP; 439 A; 322 C; 344 G; 395 T; 0 other;
     atgggtgaga aaacaaactc acgttatctc ggtgtaatca tcactcgaaa atctataatt        60
     ttcttgttca tatcaatcat caccgtcctt tcttggtttt ttatcttttc ttccacaaac       120
     cctaaccgag ttctcgatca catctcagta tcagaatcca cagatgtacc tctcatcatc       180
     atcaagaact caaacagttc tccacaaaac aacgcaccaa aaccccaaaa cagagaagga       240
     gcagaaacag aggaacccat taaagaaaac agaggaggaa caaaaacaga gtcatccatg       300
     aatcaaaaca gaggcgaaac cctccggtgt atccaaaggg tttctccttc tccaaggcca       360
     ttgaaagtct acatgtatga tatgagccca gagtttcatt ttgggttatt gggttggaaa       420
     ccagagagaa acggtgtcgt ttggcctgat atcagagtca atgttcctca ccatccaggt       480
     ggtcttaact tgcagcacag tgttgagtat tggctcacat tagatctttt gttctctgag       540
     cttccagaag attctagaag ctctcgggcc gcgatacgtg taaagaactc gagcgaagct       600
     gatgtcgtgt tcgtgccctt cttctcttca ttgagctata accgattctc taaggttaac       660
     caaaagcaga agaagagcca ggacaaagag ttgcaggaaa atgtggtgaa atacgtaacg       720
     tcccaaaaag agtggaagac ctcaggaggg aaggatcatg tgatcatggc gcatcatccg       780
     aatagtatgt cgacggcaag gcataagcta tttccggcga tgtttgtggt cgctgacttt       840
     ggtagatact cgccacatgt tgccaatgtt gacaaagaca ttgtggctcc atacaaacac       900
     cttgttccat cgtatgttaa tgacacatcg ggctttgatg gccgtccgat cttgctctac       960
     ttccaaggag ccatctaccg caaagctggt ggatttgtga gacaagagct atataatctt      1020
     ctcaaagaag aaaaagacgt ccacttctct ttcggaagcg taaggaacca cggcatatct      1080
     aaagccggcg aaggaatgag atcgtccaag ttctgtctca acatagccgg ggatacacca      1140
     tcctcgaatc gcctcttcga cgccatagct agtcactgta tacccgtgat cattagcgat      1200
     gacatcgagt taccatatga ggatgtcctc aactacaatg agttctgtct ctttgtcaga      1260
     tcatcagacg ctttaaagaa agggtttctg atgggtcttg tcaggagtat tggcagagaa      1320
     gagtataata agatgtggct tcggttgaag gaagtggaga ggtatttcga tttgcgtttt      1380
     ccggtgaagg atgacgaggg agattatgca gttcagatga tttggaaagc tgttgccagg      1440
     aaagctcctt tggtgaagat gaaggttcac agatttcaga ggtttacaag gcctttttag      1500
//
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