EBI Dbfetch

ID   BT006229; SV 1; linear; mRNA; STD; PLN; 798 BP.
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AC   BT006229;
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DT   18-APR-2003 (Rel. 75, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana At2g43580 gene, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-798
RA   Kim C.J., Chen H., Cheuk R., Shinn P., Bowser L., Carninci P., Chan M.M.,
RA   Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-798
RA   Kim C.J., Chen H., Cheuk R., Shinn P., Bowser L., Carninci P., Chan M.M.,
RA   Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (17-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Kim,C.J.,
CC   Chen,H., Cheuk,R., Shinn,P., Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Hsuan,V.W., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC   Yamada,K., Yu,G., Yuan,S., Davis,R.W.,  Theologis,A., and
CC   Ecker,J.R.
CC   Kim,C.J. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..798
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="U61022"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..798
FT                   /codon_start=1
FT                   /product="At2g43580"
FT                   /note="putative endochitinase"
FT                   /db_xref="GOA:O24598"
FT                   /db_xref="HSSP:1Q9B"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:O24598"
FT                   /protein_id="AAP12878.1"
FT                   /translation="MALTKIFLILLLSLLGLYSETVKSQNCDCAPNLCCSQFGYCGTTA
FT                   DYCGSTCQSGPCRVGGPPTGAGLVGNIVTQIFFNNIINQAGNGCAGKSFYTRDSFINAT
FT                   NTFPSFANTVTRREIATMFAHFTYETGHFCYIEEINGASRVMCDQNNRQYPCAPAKSYH
FT                   GRGPLLLSWNFNYGACGQSLGLDLLRQPELVSSNPVVAFRTALWFWMKSVRPVLNQGFG
FT                   ATIRAISGFDCDGRNLGGVNARIGYYRDYCGQLGLDPGANITC"
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SQ   Sequence 798 BP; 196 A; 199 C; 192 G; 211 T; 0 other;
     atggctctca caaaaatctt cttaatcctt ctcctatccc tcttaggttt atattctgaa        60
     accgtcaaat ctcaaaactg cgattgcgcc cctaacctat gttgcagtca gttcggttat       120
     tgcggtacca ctgcagatta ctgtggttct acgtgccaat caggtccttg tagagtcggt       180
     ggacccccta ccggtgccgg tttggttggt aatatcgtga cacaaatttt ctttaacaac       240
     attatcaacc aagccggtaa tggatgcgcg ggaaaaagtt tttacacccg ggactctttc       300
     attaacgcca ccaatacttt ccccagcttt gctaataccg ttactagacg tgaaattgct       360
     accatgtttg ctcatttcac ttacgagaca ggacacttct gctacataga agagataaac       420
     ggggcgtcac gtgtcatgtg cgaccagaac aacaggcaat atccatgtgc accggccaag       480
     agctaccatg gccgtggtcc gctcctacta tcatggaact tcaactatgg agcatgcggc       540
     cagagtctcg gcttagacct cctacgccag cccgagctgg tgagtagtaa cccagtcgtg       600
     gctttcagga cggctctgtg gttttggatg aagagcgtga ggcctgtatt gaaccaggga       660
     tttggagcca ccataagagc catcagcggt ttcgactgtg acggtaggaa cttaggtggg       720
     gtgaacgcaa ggattggcta ctatagagac tattgtgggc agcttggttt ggaccctggc       780
     gccaacataa cttgctaa                                                     798
//