EBI Dbfetch

ID   BT005962; SV 1; linear; mRNA; STD; PLN; 2259 BP.
XX
AC   BT005962;
XX
DT   19-MAR-2003 (Rel. 75, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabidopsis thaliana At4g08160 gene, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2259
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Chan M.M.,
RA   Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
XX
RN   [2]
RP   1-2259
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Chan M.M.,
RA   Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (18-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
XX
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Cheuk,R.,
CC   Chen,H., Kim,C.J., Shinn,P., Bowser,L., Chan, M.M., Chang,C.M.,
CC   Dale,J.M., Hsuan,V.W., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera, C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC   Yamada,K., Yu,G., Yuan,S., Davis,R.W.,  Theologis,A., and
CC   Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2259
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /mol_type="mRNA"
FT                   /clone="U60294"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..2259
FT                   /codon_start=1
FT                   /product="At4g08160"
FT                   /note="putative xylan endohydrolase"
FT                   /db_xref="GOA:Q8GYW5"
FT                   /db_xref="HSSP:1I1W"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q8GYW5"
FT                   /protein_id="AAO64897.1"
FT                   /translation="MEKNTNTNHTSDDNNDKNHTNEEQEKIILNPNFEDGLNNWTGRAC
FT                   KIVLHESMNSGKIVPLSGKVFAAATQRKDTWNGIQQEISGRFRRKRVYEVTAVVRIFGN
FT                   NVTSATVQATLWVLNANKREQYIVIANVQATDKNWVELKGKFVIHGSPSRVILYLEGPP
FT                   PRADILLNSLVVQHAKRNRPSPPPFYENPGFGVNIVENSEVLDGGTKPWFTLGNCKLSV
FT                   GQGAPRTLPPMARDTLGPHKPLGGNYIVVTNRTQTWMGPAQMITDKIKLFLTYQISAWV
FT                   KLGVGVSGSSMSPQNVNIALSVDNQWVNGGQVEVTVGDTWHEIAGSFRLEKQPQNVMVY
FT                   VQGPGAGIDLMIAALQIFPVDRRERVRCLKRQVDEVRKRDIVLKFSGLNDDESFDLFPY
FT                   IVKVKQTYNSFPVGTCVNRTDIDNEDFVDFFTKNFNWAVFGNELKWYATEAERGKVNYQ
FT                   DADDMLDLCIGNNINVRGHCIFWEVESTVQPWVRQLNKTDLMNAVQKRLTDLLTRYKGK
FT                   FKHYDVNNEMLHGSFYQDRLGKGVRALMFNIAHKLDPSPLLFVNDYHVEDGDDPRSSPE
FT                   KYIKLVLDLEAQGATVGGIGIQGHIDSPVGAIVCSALDMLSVLGRPIWFTELDVSSSNE
FT                   YVRGEDLEVMLWEAFAHPSVEGIMLWGFWELSMSRENANLVEGEGEVNEAGKRFLEVKQ
FT                   EWLSHAYGIINDESEFTFRGYHGTYAVEICTPVGIVLKTFVVEKGDTPLVISIDLSSL"
XX
SQ   Sequence 2259 BP; 688 A; 433 C; 553 G; 585 T; 0 other;
     atggagaaga atacaaatac gaaccataca agtgatgata ataatgataa gaatcacact        60
     aacgaagagc aggagaagat catcttaaac cctaattttg aggatggcct aaacaactgg       120
     actggaagag cgtgcaagat tgtcttacac gaatccatga acagtgggaa gatcgtaccg       180
     ctctcgggaa aagttttcgc agcagcaacg cagcgtaaag acacatggaa tgggattcaa       240
     caagagattt caggaagatt caggaggaag cgtgtgtatg aagtaacagc ggtagttcga       300
     atatttggca acaatgtcac aagtgcaaca gtacaagcga ctctctgggt cttaaacgca       360
     aacaaacgtg aacaatacat agtcattgcc aatgttcaag caacagataa gaactgggtg       420
     gagttgaagg gtaaatttgt aatccatggt tcgccatcga gagtaatact ataccttgaa       480
     ggtccacctc cacgagctga cattcttctc aacagtttag ttgttcaaca tgctaaaagg       540
     aatcgtccat cgcctcctcc tttctacgag aatcctggtt tcggagtcaa tatagtcgaa       600
     aacagtgaag ttttagatgg gggaactaaa ccatggttca ctctagggaa ctgcaagttg       660
     agtgttggac aaggcgctcc gcgcactctg cctccaatgg cgagagacac gctaggtcct       720
     cacaaacctc taggtggaaa ctacatcgtt gtgactaaca gaacgcagac ttggatgggt       780
     cctgctcaga tgataaccga taaaatcaaa ctcttcttga catatcaaat ctcagcttgg       840
     gtcaagcttg gtgtgggagt aagtggtagt agtatgagtc ctcagaatgt gaacattgca       900
     cttagcgtcg ataaccaatg ggtcaacgga ggacaagtcg aggtcacagt tggtgataca       960
     tggcatgaaa tagccggatc ttttaggcta gagaaacagc cacaaaacgt tatggtttac      1020
     gttcaaggtc ctggagctgg cattgatttg atgatcgcgg ctctgcagat tttccccgtg      1080
     gatcgtcgag aacgtgtcag atgtctcaaa agacaagttg atgaggtacg taagcgcgac      1140
     atcgtgttga aattctcagg actaaacgac gacgaatcct ttgatttgtt tccttacata      1200
     gtgaaagtga aacaaacata caacagtttc ccagtaggaa catgcgtcaa cagaacagac      1260
     atagacaatg aagactttgt agatttcttc acaaagaact ttaactgggc agtgttcgga      1320
     aacgagctca aatggtacgc gacagaagcg gaacgtggaa aggtaaatta ccaagacgca      1380
     gacgacatgt tagatctctg cattggcaac aacataaacg ttagaggaca ttgtatcttc      1440
     tgggaagttg aatccacagt tcagccatgg gttcgccagc ttaacaaaac cgatcttatg      1500
     aacgcggtac aaaagcgtct cacggatctt ttgacgcggt acaaaggtaa attcaagcac      1560
     tatgatgtca acaacgagat gcttcatggt tctttctatc aagatagact tggaaaaggt      1620
     gtaagagcac tcatgttcaa tattgcacat aagcttgatc catctccttt gcttttcgtt      1680
     aacgattatc atgttgagga cggggatgac ccgcgttcgt ctcccgagaa gtatataaaa      1740
     cttgtacttg atttggaagc tcaaggagca actgtaggag ggattgggat ccaaggacat      1800
     atagatagtc ctgttggagc tattgtttgt tctgctcttg atatgctctc tgttcttggt      1860
     cgtcccattt ggttcacaga gcttgatgtc tcttcgagta atgaatatgt taggggagag      1920
     gatcttgaag ttatgttgtg ggaagcattt gctcaccctt cagttgaagg aataatgtta      1980
     tgggggttct gggagctatc tatgagtaga gagaacgcga atctggtgga gggagaagga      2040
     gaagtaaacg aagccggaaa aagattttta gaggtgaaac aagaatggtt atctcatgca      2100
     tatgggatca tcaatgatga gtcagagttc acattcagag gctaccatgg gacttatgcc      2160
     gtcgaaattt gtactccagt tgggattgtt ctcaaaacgt tcgttgtcga aaaaggagac      2220
     actccacttg ttatctccat tgatctctct tctttgtga                             2259
//