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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT005111; SV 1; linear; mRNA; STD; PLN; 1183 BP.
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AC   BT005111;
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DT   05-MAR-2003 (Rel. 75, Created)
DT   05-MAR-2003 (Rel. 75, Last updated, Version 1)
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DE   Arabidopsis thaliana clone U50340 unknown protein (At1g56550) mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1183
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G.,
RA   Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
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RN   [2]
RP   1-1183
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Wong C., Wu H.C., Yu G.,
RA   Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (04-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC    Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Chan,M.M., Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M.,
CC   Onodera,C.S.,  Quach,H.L., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC    Yu,G., Yuan,S., Chen,H., Cheuk,R., Jones,T., Kim,C.J., Nguyen,M.,
CC   Palm,C.J., Shinn,P., Southwick,A., Tripp,M.G., Wu,T., Davis,R.W.,
CC   Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally
CC   to  this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP
CC   /PGEC)  contributed equally to this work as PIs.
CC   Annotation based on July 2002 version of the Arabidopsis genome
CC   submitted to Genbank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1183
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /mol_type="mRNA"
FT                   /clone="U50340"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1152
FT                   /codon_start=1
FT                   /gene="At1g56550"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9FXA7"
FT                   /db_xref="InterPro:IPR003388"
FT                   /db_xref="UniProtKB/TrEMBL:Q9FXA7"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAO50644.1"
FT                   /translation="MAQQSQRPISNRHISLLNRNGLILLLLLALFVILGVFLPLTKSSL
FT                   FMFPNTTSSSLSPSSSLSVSDWRDYSLAQAVKFVAKNETVIVCAVSYPFLPFLNNWLIS
FT                   ISRQKHQEKVLVIAEDYATLYKVNEKWPGHAVLIPPALDPQSAHKFGSQGFFNLTSRRP
FT                   QHLLNILELGYNVMYNDVDMVWLQDPFDYLQGSYDAYFMDDMIAIKPLNHSHDLPPLSR
FT                   SGVTYVCSCMIFLRSTDGGKLLMKTWVEEIQAQPWNNTQAKKPHDQPAFNRALHKTANQ
FT                   VKVYLLPQSAFPSGGLYFRNETWVNETRGKHVIVHNNYIIGYDKKMKRFQDFSLWLVDD
FT                   HALESPLGKLEIYQEQNTTTEGKNLTKIVRKQRKNRGKKHKLP"
FT   3'UTR           1153..1183
FT                   /gene="At1g56550"
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SQ   Sequence 1183 BP; 340 A; 274 C; 227 G; 342 T; 0 other;
     atggcgcagc agagccaacg tccaatctca aaccgtcaca tctctctcct caaccgtaac        60
     ggtctcatcc tccttctcct tctagctctc tttgttatcc tcggtgtatt cttacctttg       120
     acaaaatctt ccttgttcat gtttccaaac acaacatctt cttctctttc tccttcttct       180
     tctttatcgg tctccgactg gcgcgactat tcccttgctc aagccgttaa gtttgttgct       240
     aagaacgaga ctgtgatcgt ctgtgctgtt agctaccctt tcttgccttt tcttaacaac       300
     tggttgatta gcatttctag acagaaacat caagaaaaag ttcttgtgat cgctgaagac       360
     tatgctactt tgtacaaagt caacgaaaag tggcctggtc atgctgttct cattcctccg       420
     gcgttggatc ctcaatccgc acacaaattt ggttcccagg gtttcttcaa tctgacatct       480
     cggaggccac aacatctctt aaacattttg gagctaggtt acaatgttat gtacaatgat       540
     gttgatatgg tctggctaca agatccattt gactatttac aaggaagcta cgatgcatac       600
     ttcatggatg acatgattgc gattaagcct ttgaatcact cccatgattt accacctcta       660
     agtcgaagcg gagttactta tgtatgtagc tgcatgattt tcttgcgttc cactgatggc       720
     ggaaagcttc taatgaagac atgggtcgag gaaattcaag ctcaaccttg gaataacact       780
     caagcaaaga aaccacatga tcagcctgct tttaatcggg cacttcacaa aacagctaat       840
     caagtaaaag tctacttgct tccgcaatca gctttcccat caggaggatt gtacttcagg       900
     aatgagacat gggttaacga gacaaggggg aaacatgtca tagtccacaa taactacatt       960
     atcggttacg acaagaagat gaaacgtttt caagacttta gtctatggct agtcgatgat      1020
     catgctcttg agtccccact cggaaaacta gagatatatc aagagcagaa tactactact      1080
     gaagggaaaa atctgacgaa aatagtgaga aaacagagga aaaacagggg taaaaaacac      1140
     aagttaccct agagaggact tctccttacg tacgacaagt gta                        1183
//
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