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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT005088; SV 1; linear; mRNA; STD; PLN; 1291 BP.
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AC   BT005088;
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DT   05-MAR-2003 (Rel. 75, Created)
DT   05-MAR-2003 (Rel. 75, Last updated, Version 1)
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DE   Arabidopsis thaliana clone U20882 putative pectinacetylesterase (At3g62060)
DE   mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1291
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G.,
RA   Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
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RN   [2]
RP   1-1291
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Wong C., Wu H.C., Yu G.,
RA   Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (04-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC    Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Chan,M.M., Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M.,
CC   Onodera,C.S.,  Quach,H.L., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC    Yu,G., Yuan,S., Chen,H., Cheuk,R., Jones,T., Kim,C.J., Nguyen,M.,
CC   Palm,C.J., Shinn,P., Southwick,A., Tripp,M.G., Wu,T., Davis,R.W.,
CC   Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally
CC   to  this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP
CC   /PGEC)  contributed equally to this work as PIs.
CC   Annotation based on July 2002 version of the Arabidopsis genome
CC   submitted to Genbank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1291
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U20882"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1260
FT                   /codon_start=1
FT                   /gene="At3g62060"
FT                   /product="putative pectinacetylesterase"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:Q84JS1"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAO50621.1"
FT                   /translation="MRSLLLWIAVVVCLLCSVAAVVQSGSSDGFGKPRDTETAISFLEY
FT                   KLMAPSVPMIPLTLIHGADSKGAVCLDGTLPGYHLDRGFGSGANSWLIQLEGGGWCNNH
FT                   RSCVYRKTSRRGSSKFMEKALAFTGILSNRSEENPDFFNWNRIKLRYCDGASFSGDSQD
FT                   ESSQLFYRGQRIWQVAMEEFLSLGMKQANQALLSGCSAGGLASILHCDEFRELLPSSTK
FT                   VKCLSDAGMFLDSVDVSGGHSLRNMFQGVVTVQNLQKDLSSTCTNHLDPTSCFFPQNLV
FT                   SDIKTPMFLLNTAYDSWQIQESLAPPTADPGGIWKACKSDHSRCNSSQIQFFQEFRNQM
FT                   LFAVNSFSNSDQNGLYINSCFAHCQTERQDTWFAQDSPQLNGKRVAESVGDWYFDRAKN
FT                   VKAIDCPYPCDTTCHNLIFE"
FT   3'UTR           1261..1291
FT                   /gene="At3g62060"
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SQ   Sequence 1291 BP; 332 A; 272 C; 309 G; 378 T; 0 other;
     atgaggagct tgttgttgtg gattgcggtg gtcgtgtgct tgctatgttc agtcgcggcg        60
     gtggttcaaa gcggatctag cgacggattt gggaaaccca gagatactga gactgcgata       120
     tcttttctgg agtataaatt gatggcgcct tcggttccaa tgatacctct caccttgatt       180
     cacggagctg actctaaagg agctgtgtgc ttagatggga cgctacctgg ttatcatcta       240
     gatcgtggtt ttggatcagg tgctaacagt tggcttatcc agcttgaggg tggaggatgg       300
     tgtaacaacc ataggagctg tgtgtatcgc aaaacaagtc gacgtggttc ctctaaattc       360
     atggaaaaag ctttggcctt cactggaatt ttgagcaata gatctgaaga gaatcctgac       420
     ttctttaatt ggaacaggat caagttgcgt tactgcgatg gtgcgtcttt ctctggtgat       480
     agtcaggacg agagttcgca acttttctat cgaggacaac gaatctggca agtggctatg       540
     gaagaattcc tgtctttagg catgaagcaa gcaaaccagg ctctgctctc tggatgttca       600
     gctggaggat tagcttctat tttgcactgt gatgagttca gggaactatt acctagttcc       660
     acgaaagtaa aatgcttaag tgatgctgga atgtttctgg actcagtgga tgtctctggg       720
     ggccactcgc ttaggaatat gttccaaggt gttgttacag tgcagaacct ccaaaaggac       780
     ttgtccagta cttgtacaaa ccatttggat cctacttcgt gcttttttcc ccagaacttg       840
     gtttcagaca ttaaaacccc aatgtttctt ctcaacacag catatgactc ttggcagatc       900
     caagagagct tagctcctcc tactgctgat ccaggcggta tctggaaggc atgcaaatca       960
     gatcactcgc gatgtaattc atcacagatc caattcttcc aagaattcag gaatcaaatg      1020
     ctgtttgctg taaactcatt ctcaaactct gaccagaacg gtctttatat aaactcttgc      1080
     ttcgcgcatt gtcagactga aagacaggac acttggtttg ctcaagattc tcctcaacta      1140
     aacggaaaga gagtcgcaga gtctgtaggt gactggtact tcgaccgagc aaaaaatgtc      1200
     aaagctatcg attgtcctta cccttgtgac acaacatgtc acaatctgat tttcgagtga      1260
     gtaaatcgtt gaaccccatt tctctgattc t                                     1291
//
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