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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT004421; SV 1; linear; mRNA; STD; PLN; 1198 BP.
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AC   BT004421;
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DT   17-FEB-2003 (Rel. 74, Created)
DT   17-FEB-2003 (Rel. 74, Last updated, Version 1)
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DE   Arabidopsis thaliana clone U20435 unknown protein (At3g01620) mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1198
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G.,
RA   Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
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RN   [2]
RP   1-1198
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Wong C., Wu H.C., Yu G.,
RA   Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (14-FEB-2003) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC    Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Chan,M.M., Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M.,
CC   Onodera,C.S.,  Quach,H.L., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C.,
CC    Yu,G., Yuan,S., Chen,H., Cheuk,R., Jones,T., Kim,C.J., Nguyen,M.,
CC   Palm,C.J., Shinn,P., Southwick,A., Tripp,M.G., Wu,T., Davis,R.W.,
CC   Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally
CC   to  this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP
CC   /PGEC)  contributed equally to this work as PIs.
CC   Annotation based on July 2002 version of the Arabidopsis genome
CC   submitted to Genbank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1198
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U20435"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1167
FT                   /codon_start=1
FT                   /gene="At3g01620"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9SS93"
FT                   /db_xref="InterPro:IPR006813"
FT                   /db_xref="UniProtKB/TrEMBL:Q9SS93"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAO42415.1"
FT                   /translation="MSDGYRSSKKTDTICEDVCGQEGSRAGKAISRLRCVLRGLDFKTF
FT                   LFLFTLLPLFIFGIYLHGQKITYFLRPLWESPPKPFNILPHYYHENTSMELLCNLHGWK
FT                   LRESPRRVFDAALFSNEIDMLTLRWNELNPYITQFVLLESNSTFTGLSKQLAFADNREK
FT                   NFKFVEPRLTYGNVGGRFKKGENPFVEESFQRLALDQLIKLAGIKEDDLLIMSDVDEIP
FT                   SGHTINLLRWCDGFPPILHLQLRNYLYSYEYYVDSKSWRASVHLYKPGKTRCAHFRQSN
FT                   NLLTDSGWHCSFCFRHINDFVFKMKAYSHTDRVRFLHYLNPRRIQDIICKGTDLFDMLP
FT                   EEHTFREIIGKLGPIPRSYSAVHLPGYLIQNADSYKYLLPGNCKRESG"
FT   3'UTR           1168..1198
FT                   /gene="At3g01620"
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SQ   Sequence 1198 BP; 332 A; 276 C; 249 G; 341 T; 0 other;
     atgtccgatg gttatcgtag ttctaagaag acggatacta tctgcgaaga tgtttgtgga        60
     caggaaggtt ctcgagcagg caaggccatt tcaaggctta gatgtgttct aagaggactc       120
     gatttcaaaa cattcctgtt tctcttcact ctcctgccac tcttcatctt cggcatctat       180
     ctacacggcc agaagatcac atatttcttg agacctctat gggaatcacc tcctaaacct       240
     tttaacatcc ttccgcatta ctatcacgag aacacttcca tggaattgct ctgcaatctt       300
     catggctgga aactccgcga atctccaaga agagtctttg atgctgcctt gttcagtaac       360
     gagatcgata tgctcactct ccgttggaat gagttaaatc cttacattac tcagtttgtg       420
     cttctcgaat ctaactcaac tttcaccgga ctgtcaaaac agttggcttt cgcagacaac       480
     agggagaaga atttcaaatt cgttgagcca aggctgactt atgggaacgt tggaggaagg       540
     ttcaagaaag gcgaaaaccc ctttgtggag gaatcattcc aaaggcttgc acttgaccag       600
     ttgatcaagc tcgcaggtat aaaagaagat gatcttttga taatgtcgga tgtcgatgag       660
     atcccgagcg gccataccat caatctgctt agatggtgtg acgggttccc accgatcctt       720
     catcttcagt tgagaaacta cctctactca tatgagtact atgtcgatag caaaagctgg       780
     agagcttcgg ttcatctcta caagcctggg aaaactcggt gcgctcattt ccggcaaagc       840
     aacaatcttt tgacagattc aggttggcat tgcagtttct gtttcagaca catcaatgac       900
     ttcgtgttca agatgaaagc ttatagccat actgaccggg ttagattctt acattatctg       960
     aacccgagac gaatccaaga cattatctgc aaaggaactg atcttttcga tatgcttcct      1020
     gaagaacaca cattcaggga gattatcggc aaacttggtc cgattccacg gtcttattca      1080
     gctgttcatc tccctggata cttgattcag aatgctgata gctacaagta cttattacct      1140
     gggaactgca aacgagaatc tggctgataa ataaaggacc tctacttacc acttatca        1198
//
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