 |
|
EBI DbfetchID BT004019; SV 1; linear; mRNA; STD; PLN; 2664 BP. XX AC BT004019; XX DT 17-FEB-2003 (Rel. 74, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Arabidopsis thaliana clone RAFL15-24-A22 (R20536) unknown protein DE (At5g04500) mRNA, complete cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-2664 RA Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., RA Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G., RA Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., RA Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J., RA Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T., RA Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-2664 RA Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., RA Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Wong C., Wu H.C., Yu G., RA Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., RA Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J., RA Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T., RA Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT ; RL Submitted (14-FEB-2003) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Chan,M.M., CC Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M., Onodera,C.S., CC Quach,H.L., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C., Yu,G., CC Yuan,S., Chen,H., Cheuk,R., Jones,T., Kim,C.J., Nguyen,M., CC Palm,C.J., Shinn,P., Southwick,A., Tripp,M.G., Wu,T., Davis,R.W., CC Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation based on July 2002 version of the Arabidopsis genome CC submitted to Genbank. XX FH Key Location/Qualifiers FH FT source 1..2664 FT /organism="Arabidopsis thaliana" FT /chromosome="5" FT /mol_type="mRNA" FT /clone="RAFL15-24-A22 (R20536)" FT /note="This clone is in a modified pBluescript vector2 FT (lambda PS) as a BamHI/XhoI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..137 FT /gene="At5g04500" FT misc_difference 59 FT /gene="At5g04500" FT /note="not present in genomic sequence" FT CDS 138..2435 FT /codon_start=1 FT /gene="At5g04500" FT /product="unknown protein" FT /db_xref="GOA:Q84WB7" FT /db_xref="HSSP:1ON6" FT /db_xref="InterPro:IPR015338" FT /db_xref="UniProtKB/TrEMBL:Q84WB7" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAO42055.1" FT /translation="MMEETTDNTGTISSQKNVAASGHNHHHRYKYISNYGVGRRFLFFA FT SCFGFYAFVAATYAWFVFPPHIGRTDHVSSSSLGCREDNEGSWSIGVFYGDSPFSLKPI FT ETRNVWRNESGAWPVTNPVITCASFTNSGLPSNFLADPFLYVQGDTLYLFFETKSPITM FT QGDIGAAKSIDKGATWEPLGIALDEAWHLSFPFVFNYNGEIYMMPESNEIGQLNLYRAV FT NFPLSWKLEKVILKKPLVDSTIVHHEGIYWLIGSDHTGFGAKKNGQLEIWYSSSPLGTW FT KPHKKNPIYNGKRSIGARNGGRAFLYDGSLYRVGQDCGENYGKRIRVSKIEVLSKEEYR FT EVEVPFSLEASRKGKNSWNGVRQHHFDVKQLSSGEFIGLVDGDRVTSGDLFHRVILGYA FT SLAAAISVVILLGFLLGVVNCIVPSTWCMNYYAGKRTDALLNLETAGLFSEKLRRIGSR FT LNRVPPFLRGFVKPNSSMGKFTLGVIVILGLLLTCVGVRYIYGGSGAVEPYPFKGHLSQ FT FTLATMTYDARLWNLKMYVKRYSRCPSVKEIVVIWNKGPPPDLSELDSAVPVRIRVQKQ FT NSLNNRFEIDPLIKTRAVLELDDDIMMPCDDIEKGFRVWREHPERLVGFYPRFVDQTMT FT YSAEKFARSHKGYNMILTGAAFMDVRFAFDMYQSDKAKLGRVFVDEQFNCEDILLNFLY FT ANASGSGKAVEYVRPSLVTIDTSKFSGVAISGNTNQHYRKRSKCLRRFSDLYGSLVDRR FT WEFGGRKDGWDL" FT 3'UTR 2436..2664 FT /gene="At5g04500" XX SQ Sequence 2664 BP; 750 A; 481 C; 627 G; 806 T; 0 other; gtaattaagg aatttaatta gtaaattttt gaattcgtaa ttaacaaaaa aaaaaaaaat 60 taggaaaaga ataaattttg tacggcgata attacacggt ttcgccgccg agaggaggaa 120 gaaaaattcg ttttctgatg atggaagaga cgacggataa caccggaaca atcagctcgc 180 agaagaacgt tgctgcttct ggtcacaatc atcaccaccg ttacaaatat atctcaaatt 240 acggcgtcgg gaggcgtttt ctgttcttcg cttcctgttt tggattttac gctttcgtgg 300 ctgcgacgta cgcgtggttc gtgtttccgc cgcatatcgg tcgtacggat catgtatcgt 360 cgtcttcctt aggttgcaga gaggacaatg aaggttcatg gtccattggt gttttctatg 420 gagattctcc cttctctctc aaaccaatcg aaaccagaaa tgtatggaga aacgagagtg 480 gagcatggcc tgtgactaat ccagtaataa catgtgcctc cttcaccaat tctggtcttc 540 caagcaactt tctagctgat ccttttcttt atgtacaggg tgatactctt tacctcttct 600 tcgaaactaa aagccccatt acaatgcaag gggatatagg agctgctaaa agtattgata 660 aaggagctac ttgggaacct cttggtatag ctttggatga agcttggcac ttgtcttttc 720 cattcgtctt caattacaac ggagaaatat acatgatgcc cgagagtaat gagattggac 780 agcttaatct ctaccgtgct gttaactttc cattaagttg gaagctggag aaagttatct 840 tgaaaaagcc tcttgttgat tcgaccatag tccatcatga aggaatctat tggctaatcg 900 gatcagatca tactggtttt ggggcgaaga aaaatggaca actagaaatt tggtatagta 960 gctctccttt agggacatgg aagccacaca agaagaatcc tatctacaat ggtaaaagaa 1020 gtattggagc aagaaacgga ggcagagcgt ttctatatga cgggagtctt tatcgtgttg 1080 gtcaagattg tggtgaaaat tacggcaaaa ggatacgtgt ttctaagatt gaggttcttt 1140 ccaaggaaga gtacagagaa gttgaagtcc ctttctcttt ggaagcgtcg cgtaaaggta 1200 aaaattcttg gaacggggtt aggcagcatc attttgatgt gaaacagcta agttctggtg 1260 aattcattgg tcttgttgat ggtgaccgtg taacttcagg cgatctgttt catcgggtta 1320 ttcttggtta tgcctcactt gcagctgcta tttccgttgt tatcttactt ggctttttgc 1380 ttggggttgt gaactgcatt gttccatcaa cctggtgtat gaactactat gcggggaaaa 1440 gaaccgatgc gctcctgaat ctcgaaactg cgggtttgtt ctcagaaaag ttaagacgga 1500 ttggttctcg cttgaaccga gtaccgcctt ttctcagagg attcgtgaag cctaattcct 1560 ccatggggaa atttacgctc ggtgttatag tcattttagg acttttgctc acatgtgtag 1620 gcgtgagata catctacggt ggaagcggag ccgttgagcc ttatccattc aaaggtcact 1680 tgtctcagtt tacgttagca actatgactt atgatgctcg tctctggaat ctgaaaatgt 1740 acgtaaagcg ttactctcgt tgtccatccg ttaaagagat agttgtcata tggaacaaag 1800 gaccgcctcc tgacctgtcc gagctagact ccgcggtgcc agtcagaatc agagtccaga 1860 aacagaattc tctgaacaac agattcgaga tcgatccgct gattaaaacc cgagccgttc 1920 ttgagcttga cgacgatata atgatgcctt gtgatgacat tgaaaaaggg tttagagttt 1980 ggcgggagca tccagagaga ctggtcggat tctacccgcg ttttgttgat caaaccatga 2040 cttatagcgc agagaagttt gcaagaagtc ataaaggata caatatgatt ctcacgggtg 2100 cagcgtttat ggacgttcgc tttgcctttg atatgtatca atcagataaa gcgaaacttg 2160 gtcgggtatt tgtggacgag cagtttaatt gcgaagacat tttactgaat ttcctgtacg 2220 cgaatgctag tggatcagga aaggctgtgg agtatgtgag accgtctttg gttacaattg 2280 acacttcgaa attttccggt gtagcgatta gtggaaacac gaaccaacat tacagaaaga 2340 gaagtaagtg tctccggcga ttctcggatt tgtatggaag tttggttgat cgaagatggg 2400 aatttggtgg gagaaaagac gggtgggatt tgtagatcag tagagttact tgtagggcaa 2460 gtaagtagtt cttcaaaaaa aacaaaaatt aagccacagc tctttcttga tatatttttt 2520 gttgtaggtt caaaatgtaa ctttagcttc ttcttcttct tcttcttctt ttttttttaa 2580 tttctctttc gtattgttag atattttaga aaatggtgaa tggacaacga tttctgatta 2640 aaaaaaaaaa aaaaaaaaaa aaaa 2664 // |
|