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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT003417; SV 1; linear; mRNA; STD; PLN; 866 BP.
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AC   BT003417;
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DT   31-JAN-2003 (Rel. 74, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana endochitinase isolog (At2g43570) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-866
RA   Southwick A., Nguyen M., Tripp M., Palm C.J., Jones T., Wu T., Carninci P.,
RA   Chen H., Cheuk R., Chan M.M., Chang C.H., Dale J.M., Deng J.M.,
RA   Hayashizaki Y., Hsuan V.W., Lee J.M., Ishida J., Kamiya A., Kawai J.,
RA   Kim C.J., Narusaka M., Onodera C.S., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Shinn P., Tang C.C., Toroumi M., Wong C., Wu H.C., Yamada K.,
RA   Yu G., Yuan S., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (29-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M., Tripp,M.,
CC   Southwick,A., Palm,C.J., Jones,T., Wu,T., Chen,H., Cheuk,R.,
CC   Chan,M.M., Chang,C.H., Dale,J.M., Deng,J.M., Hsuan,V.W., Lee,J.M.,
CC   Kim,C.J., Quach,H.L., Onodera,C.S., Shinn,P., Tang,C.C.,
CC   Toroumi,M., Wong,C., Wu,H.C., Yamada,K., Yu,G., Yuan,S., Ecker,J.,
CC   Theologis,A. and Davis,R.W.
CC    Nguyen,M., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford) contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..866
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="U25566"
FT                   /note="This clone is in pENTR/SD-dTopo   This is a cloned
FT                   PCR product using RIKEN clone RAFL09-95-D04 (AY099810) as a
FT                   template ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..834
FT                   /codon_start=1
FT                   /gene="At2g43570"
FT                   /product="endochitinase isolog"
FT                   /db_xref="GOA:O24603"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:O24603"
FT                   /protein_id="AAO30080.1"
FT                   /translation="MAKPTSRNDRFALFFITLIFLILTVSKPVASQNCGCASDFCCSKY
FT                   GYCGTTDEFCGEGCQAGPCRSSGGGGDPAVSLEGTVTPDFFNSILNQRGDCPGKGFYTH
FT                   DTFMAAANSYPSFGASISKREIAAFFAHVAQETGFMCYIEEIDGPAKAASGEYCDTEKP
FT                   EFPCAQGKGYYGRGAIQLSWNYNYGLCGKALDENLLASPEKVAQDQVLAFKTAFWFWTT
FT                   NVRTSFKSGFGATIRAVNSRECSGGDSTAKAANRIKYFQDYCGKLGVAPGDNLTC"
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SQ   Sequence 866 BP; 223 A; 222 C; 208 G; 213 T; 0 other;
     atggctaaac ccacatcacg aaatgaccga tttgcccttt tcttcataac cctaattttc        60
     ctgatcctaa ccgtttccaa accggtcgcc tctcaaaact gtggctgcgc ctctgacttc       120
     tgttgcagca aatatggcta ctgtggtacg accgatgagt tctgcggcga gggctgccag       180
     gcaggacctt gccggagcag tggaggcggt ggagatcctg ctgtttcact agaaggaacg       240
     gtgacacctg acttctttaa ctctatacta aaccaaagag gtgattgtcc tggcaaagga       300
     ttctacactc acgacacctt catggccgca gctaattctt accctagctt cggtgcttcc       360
     atctccaaac gcgaaatcgc ggcgtttttc gctcacgtag cccaagaaac agggttcatg       420
     tgttacattg aggaaattga tggaccagcc aaggccgcat ccggagagta ctgcgacaca       480
     gagaaaccag agttcccatg tgcacaagga aagggctact atggccgtgg tgcaatccag       540
     ctctcttgga actacaacta cggtctctgt ggcaaagcct tggacgagaa cttattggct       600
     tcaccagaga aagttgctca agaccaggtt cttgccttca agaccgcttt ctggttctgg       660
     accactaatg ttcgcacgag ttttaaatcg ggctttggcg caacaatcag ggcagtgaat       720
     agtagggagt gtagcggagg agattctaca gccaaagccg ccaacaggat taagtatttc       780
     caagactatt gtggcaagct tggagttgca cctggagata acctcacttg ttaaagtttc       840
     cttgctatcc atccgaaaca caacta                                            866
//
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