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EBI DbfetchID BT002978; SV 1; linear; mRNA; STD; PLN; 1512 BP. XX AC BT002978; XX DT 16-JAN-2003 (Rel. 74, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 2) XX DE Arabidopsis thaliana clone RAFL15-02-G18 (R20435) unknown protein DE (At3g01620) mRNA, complete cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-1512 RA Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., RA Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G., RA Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., RA Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J., RA Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T., RA Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-1512 RA Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., RA Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Wong C., Wu H.C., Yu G., RA Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., RA Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J., RA Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T., RA Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT ; RL Submitted (15-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Chan,M.M., CC Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M., Onodera,C.S., CC Quach,H.L., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C., Yu,G., CC Yuan,S., Chen,H., Cheuk,R., Jones,T., Kim,C.J., Nguyen,M., CC Palm,C.J., Shinn,P., Southwick,A., Tripp,M.G., Wu,T., Davis,R.W., CC Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation based on July 2002 version of the Arabidopsis genome CC submitted to Genbank. XX FH Key Location/Qualifiers FH FT source 1..1512 FT /organism="Arabidopsis thaliana" FT /chromosome="3" FT /mol_type="mRNA" FT /clone="RAFL15-02-G18 (R20435)" FT /note="This clone is in a modified pBluescript vector2 FT (lambda PS) as a BamHI/XhoI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..196 FT /gene="At3g01620" FT misc_difference 2 FT /gene="At3g01620" FT /replace="a" FT /note="compared to genomic sequence" FT CDS 197..1363 FT /codon_start=1 FT /gene="At3g01620" FT /product="unknown protein" FT /db_xref="GOA:Q9SS93" FT /db_xref="InterPro:IPR006813" FT /db_xref="UniProtKB/TrEMBL:Q9SS93" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAO22787.1" FT /translation="MSDGYRSSKKTDTICEDVCGQEGSRAGKAISRLRCVLRGLDFKTF FT LFLFTLLPLFIFGIYLHGQKITYFLRPLWESPPKPFNILPHYYHENTSMELLCNLHGWK FT LRESPRRVFDAALFSNEIDMLTLRWNELNPYITQFVLLESNSTFTGLSKQLAFADNREK FT NFKFVEPRLTYGNVGGRFKKGENPFVEESFQRLALDQLIKLAGIKEDDLLIMSDVDEIP FT SGHTINLLRWCDGFPPILHLQLRNYLYSYEYYVDSKSWRASVHLYKPGKTRCAHFRQSN FT NLLTDSGWHCSFCFRHINDFVFKMKAYSHTDRVRFLHYLNPRRIQDIICKGTDLFDMLP FT EEHTFREIIGKLGPIPRSYSAVHLPGYLIQNADSYKYLLPGNCKRESG" FT 3'UTR 1364..1512 FT /gene="At3g01620" XX SQ Sequence 1512 BP; 421 A; 338 C; 296 G; 457 T; 0 other; agacggctat aattggcgtt acagttttgg tgaaaggaga aggatcgatt tcaagacaga 60 aattctcgga tttgatcctc ctccgagaac tagaccactc tctcttgttt ttctttttct 120 gtagattttc tgtttattca aaaacttatt tttttcgtcc aaaatttgac tttcctgaga 180 actaatcatc atcatcatgt ccgatggtta tcgtagttct aagaagacgg atactatctg 240 cgaagatgtt tgtggacagg aaggttctcg agcaggcaag gccatttcaa ggcttagatg 300 tgttctaaga ggactcgatt tcaaaacatt cctgtttctc ttcactctcc tgccactctt 360 catcttcggc atctatctac acggccagaa gatcacatat ttcttgagac ctctatggga 420 atcacctcct aaacctttta acatccttcc gcattactat cacgagaaca cttccatgga 480 attgctctgc aatcttcatg gctggaaact ccgcgaatct ccaagaagag tctttgatgc 540 tgccttgttc agtaacgaga tcgatatgct cactctccgt tggaatgagt taaatcctta 600 cattactcag tttgtgcttc tcgaatctaa ctcaactttc accggactgt caaaacagtt 660 ggctttcgca gacaacaggg agaagaattt caaattcgtt gagccaaggc tgacttatgg 720 gaacgttgga ggaaggttca agaaaggcga aaaccccttt gtggaggaat cattccaaag 780 gcttgcactt gaccagttga tcaagctcgc aggtataaaa gaagatgatc ttttgataat 840 gtcggatgtc gatgagatcc cgagcggcca taccatcaat ctgcttagat ggtgtgacgg 900 gttcccaccg atccttcatc ttcagttgag aaactacctc tactcatatg agtactatgt 960 cgatagcaaa agctggagag cttcggttca tctctacaag cctgggaaaa ctcggtgcgc 1020 tcatttccgg caaagcaaca atcttttgac agattcaggt tggcattgca gtttctgttt 1080 cagacacatc aatgacttcg tgttcaagat gaaagcttat agccatactg accgggttag 1140 attcttacat tatctgaacc cgagacgaat ccaagacatt atctgcaaag gaactgatct 1200 tttcgatatg cttcctgaag aacacacatt cagggagatt atcggcaaac ttggtccgat 1260 tccacggtct tattcagctg ttcatctccc tggatacttg attcagaatg ctgatagcta 1320 caagtactta ttacctggga actgcaaacg agaatctggc tgataaataa aggacctcta 1380 cttaccactt atcagtccct ctagttgtct ttagcttttt gttctcgctt tctctatctc 1440 atctctgtac atacaactta cagtatcaga atttttgtag cgttacggat ccgaaaaaaa 1500 aaaaaaaaaa aa 1512 // |
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