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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT002117; SV 1; linear; mRNA; STD; PLN; 1576 BP.
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AC   BT002117;
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DT   21-NOV-2002 (Rel. 73, Created)
DT   21-NOV-2002 (Rel. 73, Last updated, Version 1)
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DE   Arabidopsis thaliana putative protein (At5g02410) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1576
RA   Nguyen M., Karlin-Neumann G., Southwick A., Tripp M., Miranda M.,
RA   Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R.,
RA   Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J.,
RA   Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M.,
RA   Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (19-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Sh inozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Tripp,M., Palm,C.J., Jones,T., Wu,T., Chen,H.,
CC   Cheuk,R., Chan,M.M., Chang,C.H., Dale,J.M., Deng,J.M., Hsuan,V.W.,
CC   Lee,J.M., Kim,C.J., Quach,H.L., Shinn,P., Tang,C.C., Toroumi,M.,
CC   Wallender,E.K., Wong,C., Wu,H.C., Yamada,K., Yu,G., Yuan,S.,
CC   Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford) contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1576
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U24268"
FT                   /note="This clone is in pENTR/SD-dTopo   This is a cloned
FT                   PCR product using RIKEN clone RAFL09-42-D24 (AY099540) as a
FT                   template ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1530
FT                   /codon_start=1
FT                   /gene="At5g02410"
FT                   /product="putative protein"
FT                   /db_xref="GOA:Q8L638"
FT                   /db_xref="InterPro:IPR007006"
FT                   /db_xref="InterPro:IPR016900"
FT                   /db_xref="UniProtKB/TrEMBL:Q8L638"
FT                   /protein_id="AAN72128.1"
FT                   /translation="MGKLAVAAITSLWVIPMSIIVNHIVPEPYMDEIFHVPQAQQYCNG
FT                   NFRSWDPMITTPPGLYYLSLAHVASLFPGMLLMENTSQSFSEACSTSVLRSTNAVSAVL
FT                   CGVLVYEIIRFLGPNLSDRKATFMALVMSLYPLHWFFTFLYYTDVASLTAVLAMYLTCL
FT                   KRRYVLSALFGTLAVFIRQTNVVWMLFVACSGILDFTLDSSKQKGKQEVNQELHQSSNK
FT                   KGATLRSNLRKRKSDISSDTSDPFNHGQTVPSTEDTSDLVYDIYTVISTSWNLKWRILI
FT                   KFSPFIFVVVAFGIFILWNGGIVLGAKEAHVVSLHFAQIMYFSLVSALFTAPLHFSVNQ
FT                   LRHQFHQLHRNWSLSLILTLVALVAGFVSVHFFSLAHPYLLADNRHYPFYLWRKIINAH
FT                   WLMKYILVPVYVYSWFSILTLLAKTRRQTWILVYFLATCGVLVPTPLIEFRYYTIPFYL
FT                   FMLHSCVRSSSFATWLLIGTIFVSINVFTMAMFLFRPFKWSHEDGVQRFIW"
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SQ   Sequence 1576 BP; 392 A; 328 C; 315 G; 541 T; 0 other;
     atggggaaat tagccgttgc agcgatcacg agcttgtggg tgattccgat gtcgattatc        60
     gtcaatcaca ttgttcctga accctacatg gacgagatat ttcatgtgcc tcaagctcag       120
     caatactgca atgggaattt taggagctgg gatccaatga tcactacccc acctggattg       180
     tactatcttt cactagcaca tgttgctagt ttgtttccag gaatgttgtt gatggaaaat       240
     acatctcagt ccttttcaga agcttgttcg acatctgtcc tgcggtctac aaatgctgtt       300
     tctgcagtat tgtgtggtgt tttagtgtat gagataataa gattcttggg gccgaatctt       360
     agtgatagaa aagcgacttt tatggcgtta gtcatgtcgc tttaccctct ccattggttc       420
     ttcactttcc tatactatac agatgttgcg tccctaaccg cagttcttgc catgtacctt       480
     acttgtttga aaagacgata tgtgctcagt gcattgtttg gcactttagc agtttttatc       540
     cgacaaacaa atgtagtctg gatgcttttc gttgcttgct caggtattct agacttcacc       600
     cttgactcgt ctaagcaaaa aggaaaacaa gaagtaaatc aagaactgca tcagtctagt       660
     aataagaaag gagcaacttt gagatcaaat cttagaaaaa gaaaatctga tatcagctca       720
     gacacttcag acccttttaa ccacggtcaa actgttcctt caacagagga tacttcagac       780
     ttagtgtatg atatttatac tgtaatctca acatcttgga atctgaagtg gaggattttg       840
     atcaagttta gcccttttat ctttgttgtg gtggcgtttg gtatttttat cctctggaac       900
     gggggtatag tcctcggtgc aaaagaggct catgtagttt cactgcattt tgcgcagata       960
     atgtatttta gtctcgtttc tgctcttttc actgctcccc tacacttctc agtaaatcaa      1020
     ctgagacatc agttccatca gctccataga aattggtcat taagccttat actaactctt      1080
     gtggctctag tagccggatt tgtctctgta cactttttca gcttggctca tccatatctt      1140
     cttgctgata atcgccatta tcctttctac ctatggagaa aaattatcaa tgcgcattgg      1200
     ttaatgaagt acatattagt cccggtatac gtctattcct ggttctcaat cctaacttta      1260
     ttagcgaaaa ctcgaaggca gacctggata ttggtctatt tcttagctac atgcggtgtt      1320
     cttgttccta ctccattgat cgagttcaga tattacacca ttccgtttta cctcttcatg      1380
     cttcactcct gtgtcagaag cagcagcttc gccacttggc ttctcatcgg aacgattttt      1440
     gtctctatca atgtgtttac aatggcaatg ttcttgttta gaccgtttaa gtggagccat      1500
     gaagatggtg tccagaggtt tatatggtag ggacaaggtt tattatactc tttttgatgc      1560
     tattgtttgg ttcctc                                                      1576
//
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