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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT000619; SV 1; linear; mRNA; STD; PLN; 1191 BP.
XX
AC   BT000619;
XX
DT   24-OCT-2002 (Rel. 73, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana alpha-galactosidase - like protein
DE   (At5g08370/F8L15_100) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1191
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Chan M.M.,
RA   Chang C.H., Dale J.M., Deng J.M., Hayashizaki Y., Hsuan V.W., Ishida J.,
RA   Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Palm C.J., Quach H.L., Sakurai T.,
RA   Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wallender E.K.,
RA   Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-1191
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Chan M.M.,
RA   Chang C.H., Dale J.M., Deng J.M., Hayashizaki Y., Hsuan V.W., Ishida J.,
RA   Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Palm C.J., Quach H.L., Sakurai T.,
RA   Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wallender E.K.,
RA   Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (25-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Cheuk,R.,
CC   Chen,H., Kim,C.J., Shinn,P., Banh,J. Bowser,L., Chan,M.M.,
CC   Chang,E., Dale,J.M., Deng, J.M., Goldsmith,A.D., Jones,T.,
CC   Karlin-Neumann,G., Lam,B., Lee,J.M., Lin,J., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Quach,H.L., Southwick,A., Tang,C.C.,
CC   Toriumi,M., Wu,H.C., Yamada,K., Yamamura, Y., Yu,G., Davis,R.W.,
CC   Theologis,A., and Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1191
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U21804"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1191
FT                   /codon_start=1
FT                   /product="At5g08370/F8L15_100"
FT                   /note="alpha-galactosidase - like protein"
FT                   /db_xref="GOA:Q8RX86"
FT                   /db_xref="HSSP:1UAS"
FT                   /db_xref="InterPro:IPR013785"
FT                   /db_xref="UniProtKB/TrEMBL:Q8RX86"
FT                   /protein_id="AAN18186.1"
FT                   /translation="MVLLSFSLRFIAFTLTITLTQIADGFQSRMLMNNGLALSPQMGWN
FT                   SWNHFQCNINETLIKQTADAMVSSGLSAIGYKYINIDDCWGELKRDSQGSLVAKASTFP
FT                   SGIKALSDYVHSKGLKLGIYSDAGTLTCSQTMPGSLGHEEQDAKTFASWGIDYLKYDNC
FT                   ENTGTSPRERYPKMSKALLNSGRSIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWK
FT                   SMTLIADQNDRWASYARPGSWNDPDMLEVGNGGMTKEEYMSHFSIWALAKAPLLIGCDL
FT                   RSMDKVTFELLSNKEVIAVNQDKLGIQGKKVKKEGDLEVWAGPLSKKRVAVILWNRGSA
FT                   SANITARWAEIGLNSSDIVNARDLWEHSTYSCVKKQLSALVEPHACKMYTLTRRKA"
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SQ   Sequence 1191 BP; 375 A; 225 C; 288 G; 303 T; 0 other;
     atggttcttc ttagtttctc cttaagattc attgcgttca ctctgactat aactctgact        60
     cagattgctg atgggtttca gagtcgaatg ttgatgaaca atggacttgc tctctctcct       120
     caaatgggat ggaacagctg gaatcatttt cagtgtaata tcaatgaaac ccttatcaaa       180
     caaaccgctg atgcaatggt ttcaagtggt ctttctgcaa taggttacaa gtatatcaac       240
     atagatgatt gttggggtga actcaagaga gattctcagg ggagtttggt tgcaaaagca       300
     tcaacatttc cttcaggaat caaagcttta tcagattatg ttcatagcaa agggctaaaa       360
     cttgggatat actctgatgc cgggactctt acctgcagcc aaaccatgcc gggatcactc       420
     gggcatgaag aacaagatgc caagacattt gcctcatggg ggattgatta cctcaagtat       480
     gataactgcg aaaatacagg gacaagtcca agagaaagat accctaagat gagtaaagcg       540
     ctgttaaatt caggaagatc catattcttc tctctgtgcg aatggggaca agaggatcca       600
     gcaacttggg caggagatat tggcaacagt tggagaacaa caggagatat ccaagataat       660
     tggaaaagca tgacattgat agcggatcag aatgatcgat gggcatctta tgcaagacca       720
     ggatcgtgga acgatccaga catgcttgaa gtgggaaatg gaggcatgac taaggaagaa       780
     tacatgtcgc atttcagcat ctgggcattg gcaaaagctc ctctgctgat cggctgcgat       840
     cttagatcga tggacaaagt tacatttgaa ttgcttagca acaaagaggt gattgctgtt       900
     aatcaagaca aacttgggat ccagggaaag aaagtaaaga aagaaggtga tcttgaggta       960
     tgggcaggtc cactaagcaa gaaacgagta gcggtcatcc tatggaacag aggatcagca      1020
     tctgcaaaca tcacagctcg atgggctgag attggcctca attcatcaga tattgttaat      1080
     gctcgtgact tatgggagca ttcgacatat tcatgtgtta aaaagcagct atctgcccta      1140
     gtggagcctc atgcctgcaa aatgtatact cttacaagac gcaaggcata a               1191
//
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