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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT000346; SV 1; linear; mRNA; STD; PLN; 1404 BP.
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AC   BT000346;
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DT   24-OCT-2002 (Rel. 73, Created)
DT   24-OCT-2002 (Rel. 73, Last updated, Version 1)
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DE   Arabidopsis thaliana putative glucan synthase (At3g07160) mRNA, complete
DE   cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1404
RA   Nguyen M., Karlin-Neumann G., Southwick A., Tripp M., Miranda M.,
RA   Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R.,
RA   Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J.,
RA   Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M.,
RA   Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (19-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pENTR (ORF) clones using the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Tripp,M., Palm,C.J., Jones,T., Wu,T., Chen,H.,
CC   Cheuk,R., Chan,M.M., Chang,C.H., Dale,J.M., Deng,J.M., Hsuan,V.W.,
CC   Lee,J.M., Kim,C.J., Quach,H.L., Shinn,P., Tang,C.C., Toroumi,M.,
CC   Wallender,E.K., Wong,C., Wu,H.C., Yamada,K., Yu,G., Yuan,S.,
CC   Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford) contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1404
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U25187"
FT                   /note="This clone is in pENTR/SD-dTopo   This is a cloned
FT                   PCR product using RIKEN clone RAFL09-84-B14 (AY099734) as a
FT                   template ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1311
FT                   /codon_start=1
FT                   /gene="At3g07160"
FT                   /product="putative glucan synthase"
FT                   /db_xref="GOA:Q8LPI6"
FT                   /db_xref="InterPro:IPR003440"
FT                   /db_xref="UniProtKB/TrEMBL:Q8LPI6"
FT                   /protein_id="AAN15665.1"
FT                   /translation="MMSFFFTTVGFYLCTMLTVLTVYIFLYGRAYLALSGVGATIRERA
FT                   ILLDDTALSAALNAQFLFQIGVFTAVPMVLGFILEQGFLQAIVSFITMQFQLCTVFFTF
FT                   SLGTRTHYFGRTILHGGARYQATGRGFVVKHIKFSENYRLYSRSHFVKAMEVILLLVVY
FT                   LAYGNDEAGAVSYILLTVSSWFLAVSWLFAPYLFNPAGFEWQKVVEDFKEWTNWLFYRG
FT                   GIGVKGAESWEAWWEEELSHIRTLSGRIMETILSLRFFIFQYGIVYKLKLQGSDTSFAV
FT                   YGWSWVAFAMIIVLFKVFTFSQKISVNFQLLLRFIQGLSLLMALAGIIVAVVLTPLSVT
FT                   DIFACVLAFIPTGWGILSIACAWKPVLKRMGMWKSIRSLARLYDALMGMLIFLPVALCS
FT                   WFPFVSTFQTRMMFNQAFSRGLEISLILAGDNPNSGL"
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SQ   Sequence 1404 BP; 319 A; 274 C; 328 G; 483 T; 0 other;
     atgatgtcat tcttctttac aaccgttggc ttctatctat gtacaatgtt gacggtgctt        60
     actgtgtata ttttcttata tgggagggca tatctggcac tttctggagt tggagctact       120
     attcgagaaa gagctattct tctggacgat actgcactta gcgccgcctt gaatgctcag       180
     tttctgtttc agattggtgt cttcactgct gtgccaatgg ttttgggatt tattttggaa       240
     cagggttttc tccaggccat cgtcagtttc ataacaatgc aatttcagct atgtactgtc       300
     ttcttcacat tttcccttgg tacaagaacc cattattttg gacggacaat tctccatggt       360
     ggtgcaaggt accaagccac tggaagaggc ttcgtcgtga agcatatcaa attttctgaa       420
     aactaccgtc tttattccag aagtcatttt gtcaaagcaa tggaagttat tcttttattg       480
     gttgtgtacc ttgcgtatgg caatgatgaa gctggtgcgg tttcctacat cctgctgaca       540
     gttagcagct ggtttttggc tgtttcttgg ctgtttgctc cgtacctatt caaccctgcc       600
     ggatttgagt ggcagaaagt cgtggaggac ttcaaagaat ggacaaattg gctcttttac       660
     agaggtggaa ttggtgtgaa aggagctgaa agctgggaag catggtggga agaagaactg       720
     tctcacattc ggaccttgag cgggaggata atggagacta ttttaagtct acgattcttt       780
     atcttccagt atggtattgt ctacaaactg aagctacaag gatcagatac atcatttgcg       840
     gtgtacggtt ggtcatgggt tgcatttgca atgattatag ttcttttcaa ggtctttacc       900
     ttcagccaga agatttctgt caatttccag cttttactga ggtttataca aggtctatcc       960
     ttattgatgg ctctagctgg cataatcgta gcagttgtgc tcacaccctt gtcagtgaca      1020
     gacatatttg catgcgtatt ggcttttata ccgacaggat ggggaattct ttctattgcg      1080
     tgtgcttgga agccagtcct aaagcgaatg gggatgtgga aatcgattcg ttccctagca      1140
     aggctatatg atgcgttaat gggaatgctc atatttcttc ccgttgctct ctgctcctgg      1200
     ttcccttttg tgtcgacctt ccagacacgt atgatgttta accaagcctt cagccgcggt      1260
     ctcgagatct ctcttattct tgcaggagac aatcccaatt ctggtcttta aacttttgga      1320
     agctgttatg tttatgtttt tcatacattt atttgtgttt agttttccga gtgtagcagt      1380
     agtaaatgat gggagcctct ctgt                                             1404
//
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