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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT000311; SV 1; linear; mRNA; STD; PLN; 1432 BP.
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AC   BT000311;
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DT   24-OCT-2002 (Rel. 73, Created)
DT   24-OCT-2002 (Rel. 73, Last updated, Version 1)
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DE   Arabidopsis thaliana unknown protein (At3g27540) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1432
RA   Nguyen M., Karlin-Neumann G., Southwick A., Tripp M., Miranda M.,
RA   Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R.,
RA   Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J.,
RA   Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M.,
RA   Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (19-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pENTR (ORF) clones using the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Tripp,M., Palm,C.J., Jones,T., Wu,T., Chen,H.,
CC   Cheuk,R., Chan,M.M., Chang,C.H., Dale,J.M., Deng,J.M., Hsuan,V.W.,
CC   Lee,J.M., Kim,C.J., Quach,H.L., Shinn,P., Tang,C.C., Toroumi,M.,
CC   Wallender,E.K., Wong,C., Wu,H.C., Yamada,K., Yu,G., Yuan,S.,
CC   Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford) contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1432
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U25363"
FT                   /note="This clone is in pENTR/SD-dTopo   This is a cloned
FT                   PCR product using RIKEN clone RAFL09-95-K08 (AY099829) as a
FT                   template ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1173
FT                   /codon_start=1
FT                   /gene="At3g27540"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9LT58"
FT                   /db_xref="InterPro:IPR006813"
FT                   /db_xref="UniProtKB/TrEMBL:Q9LT58"
FT                   /protein_id="AAN15630.1"
FT                   /translation="MSDGYINSKKTDDICEDVCGQGSKAAKTISRLKCVLKGFDLRTYL
FT                   FLFVLMPFGILAIYLHGQKFTYFFRPLWESPPKPFQTIPHYYNENVTMESLCSLHGWGI
FT                   RDSPRRVFDAVLFSNEKDLLTVRWNELYPYVTQFVILESNSTFTGLPKPLVFKSNKDQF
FT                   KFVEPRLTYGTIGGRFRKGENPFVEEAYQRVALDQLLRIAGIQEDDLLIMSDVDEIPSA
FT                   HTINLLRWCDDIPPVLHLQLKNYLYSFEYYVDSKSWRASIHRYSPGKTRYAHFRQSNVM
FT                   LADSGWHCSFCFRYISEFIFKMKAYSHSDRVRFSHYLNPRRIQDVICKGTDLFDMLPEE
FT                   YTFKEIIGKMGPVPRSYSAVHLPSYLLYNAEQYKYLLPGNCIREKQTGFI"
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SQ   Sequence 1432 BP; 408 A; 233 C; 324 G; 467 T; 0 other;
     atgtccgatg gatacatcaa ttcgaagaag actgatgata tttgcgaaga tgtttgtgga        60
     cagggatcaa aagcagcaaa aacaatctca aggctaaaat gtgtgcttaa aggttttgat       120
     ttaagaacat acttgttcct ctttgtgttg atgccatttg gtatcttagc aatttatcta       180
     cacggccaaa agttcactta tttctttaga cctctttggg aatcacctcc gaagccattt       240
     caaaccattc ctcattacta taatgagaat gttactatgg aatctctctg tagtcttcat       300
     ggttggggaa ttagagactc gcccagacgg gttttcgacg cggttttgtt tagtaatgag       360
     aaagatcttt taactgttag atggaatgag ctttatcctt acgtgacaca gtttgtgatt       420
     cttgaatcta attctacgtt tactggtttg cctaaaccat tggtgtttaa gagtaataag       480
     gatcagttta agtttgtgga gccgcggcta acttatggga cgattggtgg acggtttagg       540
     aaaggcgaga atccgtttgt cgaagaagcg tatcagcgag ttgcgttgga tcagttgctt       600
     aggattgctg gtattcaaga agatgatttg ttgataatgt ctgatgttga tgagattcct       660
     agtgctcata ctatcaatct tttgagatgg tgtgatgata ttcctccagt tcttcacctt       720
     cagttgaaga attatttgta ttctttcgaa tactatgtcg atagcaagag ctggagagcg       780
     tctatacacc gttacagtcc agggaaaacg cggtatgctc atttccgtca gagtaatgtt       840
     atgttagctg attctggatg gcattgtagc ttctgtttcc gttatataag tgagtttata       900
     ttcaagatga aagcttatag tcattcagac cgtgtcagat tctctcatta cctgaatcca       960
     aggaggattc aagatgttat ttgcaaagga actgatttgt ttgatatgtt acctgaagaa      1020
     tacacattca aggagattat aggcaaaatg ggacctgtac ctcggtctta ttcagcggtt      1080
     catcttcctt cgtacctact gtataacgcc gagcagtaca aatacttgtt gcctggtaat      1140
     tgcataagag aaaaacagac agggtttata tgatgattgc ttttaaagtg ttcttgtata      1200
     gttctaagct tcagggcctt tgcatcattc ttgagataaa aagagcaaaa ttttgcgcga      1260
     aagagaggat attgaagaac gtagccaaga agcgtatata acccgattgc tggatatttt      1320
     tgcgatacag gagggtttgt gagaacaaaa agagcttact atgagttaga gcagcacaac      1380
     aattctcagg tttttttaac aatgggaaaa aatgttgttg cctaaggctg at              1432
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