 |
|
EBI DbfetchID BC167687; SV 1; linear; mRNA; STD; VRT; 2918 BP. XX AC BC167687; XX DT 06-JUN-2008 (Rel. 96, Created) DT 18-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Xenopus tropicalis hypothetical protein LOC100170600, mRNA (cDNA clone DE IMAGE:7546851), partial cds. XX KW . XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-2918 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2918 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2918 RA Klein S., Gerhard D.S.; RT ; RL Submitted (04-JUN-2008) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Richard M. Harland Laboratory, University of CC California, Berkeley CC cDNA Library Preparation: Richard M. Harland Laboratory CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 334 Row: a Column: 12 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Similarity but not CC identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2918 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="E. coli XL1-Blue derivative, Stratagene FT ElectroTen-Blue" FT /mol_type="mRNA" FT /clone_lib="NIH_XGC_tropGas7" FT /clone="IMAGE:7546851" FT /tissue_type="Whole embryo, Gastrula (st. 10.5-12.5)" FT /note="Vector: pCS108" FT /db_xref="taxon:8364" FT gene <1..2918 FT /gene="LOC100170600" FT CDS <1..1310 FT /codon_start=3 FT /gene="LOC100170600" FT /product="LOC100170600 protein" FT /db_xref="UniProtKB/TrEMBL:B3DM36" FT /protein_id="AAI67687.1" FT /translation="LGLSREKRGCWVVCMPPSMRCSFFRVALIALLLVALLQLLYLSLL FT SNLHGQQQRSAYPVPVGTSHTGSQWHRELKEHLRAAKVGGILDSSGQYWIYRHLLPHEK FT GNWKDLDVVLASHASVNNLGHLQDLVQHWDGRISLALFASNAVQAKLAVMFVYALSQLC FT PHVRQRVSFHLVCKSSDRVTFPELEDLSDFATLPNCEAVFSKAADMGIKVVNYAGNASY FT PNNLLRNVARAGIESAAYVLVVDIDMVPSEGLRSGFVNLATGGVDQHLVFVVPAFEIRH FT TRRLPSTKEELMRLYQVGEVRAFYEELCPRCQAPTNYSLWINLPEKKPAAKLGVAYVVE FT WKDPWEPFYIGRADVPAYDERFKQYGFNRISQACELNMAGFSFAVLDSAFLLHKGHKLP FT GDFHSQKDAENRRNRQLYRGFKEELRLRYPESSRRC" XX SQ Sequence 2918 BP; 812 A; 637 C; 660 G; 809 T; 0 other; aattggggct gtcccgcgaa aagcggggct gttgggtggt atgcatgccc cctagtatgc 60 gttgctcatt tttcagggtg gcacttattg cccttcttct tgttgccctc ctccaactac 120 tttatctctc tctgctatct aacctccatg gccagcagca gcgctctgcc tacccggtgc 180 ctgtgggcac gtctcataca ggctcccagt ggcacaggga actgaaggaa catcttaggg 240 ctgctaaagt aggtggtatt ttggattcca gcgggcagta ctggatctac cgccatctgt 300 tgcctcatga gaagggcaac tggaaagact tggacgtggt tttggcttct cacgcaagtg 360 tgaataacct gggacatttg caggatctag tgcagcactg ggatggaagg atatcactgg 420 cactatttgc ttctaatgcc gtgcaagcaa aactggctgt catgtttgtg tatgccctct 480 ctcagctgtg cccacatgta aggcagaggg tgtctttcca tctagtatgc aaatctagtg 540 atagggtaac tttcccagaa ctggaagatc tttctgactt tgccactctc cctaactgtg 600 aggcagtttt ctccaaggca gcagacatgg gaattaaggt cgttaattat gcaggtaatg 660 cttcttaccc caacaactta ctgagaaatg tcgccagagc aggtattgaa agtgccgctt 720 atgttctggt ggttgatatt gatatggtgc ctagtgaagg cctaaggtca gggtttgtaa 780 atcttgctac tgggggagtg gatcagcatt tggtttttgt ggtacctgcc tttgaaatcc 840 gccatacaag acgccttcct agcactaagg aggaactgat gcggctgtat caggtgggcg 900 aagtacgagc attctatgaa gagttgtgtc cacggtgtca ggcacctact aattattctc 960 tctggataaa cttgccggaa aagaaaccag ctgcaaaact tggagttgca tatgttgttg 1020 agtggaagga tccctgggag ccattttaca tagggcgtgc tgatgttcca gcctatgatg 1080 agaggtttaa gcagtatggc ttcaacagga taagtcaggc ttgtgaattg aatatggcgg 1140 gcttctcatt tgctgtactt gactcagcct tcctgcttca taagggccac aagcttccag 1200 gtgacttcca cagtcagaaa gatgcagaaa atcgaagaaa tcggcaactg tacagaggct 1260 tcaaggagga gctaagactc cgatatccgg agtcttcccg tcgttgctga aagggttctg 1320 gagatggcag tgctgggcac gcatgttgaa cgtttcatgg tcatgtctag gttttaggaa 1380 ttgatatcat aggtttggtc ttcaagtctg tgataaagat caacatgttt tctatacagg 1440 tattctgggt gaagtagagt atattgttac tactggttat tgttatggtt atcactgaat 1500 attacttctg gtctggaaat tgtcagactt aattacatgt tttcctgact caggaaaact 1560 cttatgctca ggagaatatc tacaaacttt tggaccttca gctgttgcta aattacaact 1620 aaaattgctc ctaaccacac tcttaggcat cggtactacc tgcattttcc ctgtttgcat 1680 agaaacacag gcgttgaaca ggccaatcgc ctctctgtct tccccatctt cagtgtacac 1740 tgacaggcac aggatcagcc tgggggcaga aagtgttgca gaaactggaa attctgcagg 1800 atggtagtga atctgccttc tcgatgcaag ctagaaagtg gcaagtgtgt cattggcctt 1860 aactattggg tatggtgtga actgtacttg ggcaacaact ggaagtccac aggttttaag 1920 ggcatcattt cttaaccact gattttgtcg ctgaaaagat aaaggatttt ttatttataa 1980 aatcatttca cagattatga aacaaaacat aaccaaaaca aatcccacaa aaacacccat 2040 ccctctgtcc attggcaact ctccaccaaa cacaccaaat caaaggctgg tttgcaaagt 2100 cttgtgtttg tccatacaac cttccttcca ccacctccca accaattcat gatccccaga 2160 aaagtatttc ctggtccaac cctctccagt ttccatcccc caacaaaaac acagccaata 2220 gcatttaagc aacacattaa taaaatgatc cacataacat atatatctat gccaagctga 2280 gcagattgcc ccaggccaca gaaagctgca cctccagcct atagagaggg aactgagaag 2340 atatagggac taatgaaagg tgcaggctac ctatcaacat gagtttaatg agtaggactt 2400 ctactgaaca taatttttgc ctattgttat taataggaaa atctatgttt tttttcttga 2460 acagttgtgg gagcagaagc aggagaaagc agtttatcag gtgacacttc acagataaac 2520 actgtcttat ctgcttatta gacatctgct catctgtaag ctaaaacaga aacaacaaag 2580 gtggccgtat acgttaaaat ccattgtttg gcgaggtttc caattgaaca aatcttcttg 2640 cgatatgtcc acctaaggtg gctgatatcg ggctgattcg atcatcgatg gctcctatgc 2700 ccattacagt gataactata gggtccgtca gaccgaggac cacataaatg acccaatgca 2760 gtccccgatc ggataggaaa atcaaacctg tttgatcaat acctggctga tttttagcca 2820 aatatcaata aggaaggcct gttgggggtg ccccatacat gagcagataa tctgttcaat 2880 cggtctaaaa aaaaaaagaa acaaaaaaaa aaaaaaaa 2918 // |
|