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EBI DbfetchID BC162724; SV 1; linear; mRNA; STD; VRT; 1964 BP. XX AC BC162724; XX DT 14-JUN-2008 (Rel. 96, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 10) XX DE Danio rerio similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide DE N-acetylgalactosaminyltransferase-like 4, mRNA (cDNA clone MGC:194153 DE IMAGE:9037940), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1964 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1964 RG NIH MGC Project RA ; RT ; RL Submitted (03-APR-2008) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Harvard CC cDNA Library Preparation: British Columbia Cancer Research Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRCY Plate: 2 Row: B Column: 18. XX FH Key Location/Qualifiers FH FT source 1..1964 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_38" FT /clone="MGC:194153 IMAGE:9037940" FT /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo FT 5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole FT embryo 48 hpf, whole adult fish" FT /note="Vector: pCR4-TOPO reverse; Clone identification FT sequence tag: CAGCTTCC" FT /db_xref="taxon:7955" FT gene 1..1964 FT /gene="LOC561084" FT CDS 82..1911 FT /codon_start=1 FT /gene="LOC561084" FT /product="similar to FT UDP-N-acetyl-alpha-D-galactosamine:polypeptide FT N-acetylgalactosaminyltransferase-like 4" FT /db_xref="GOA:B3DHD4" FT /db_xref="InterPro:IPR000772" FT /db_xref="InterPro:IPR001173" FT /db_xref="InterPro:IPR008997" FT /db_xref="UniProtKB/TrEMBL:B3DHD4" FT /db_xref="ZFIN:ZDB-GENE-080723-30" FT /protein_id="AAI62724.1" FT /translation="MACTRRTKTLVSTCVILSGMTNILCLLYVGWITNYVSNNGNVKVA FT GRTHEKKFDDDSKGETLRIIERLDRLESVVNQHIQEKPQSDIEDSADLSLSETLFAHWG FT HELGPESRKVALRKFQYYGYNAYLSDRLSLDRAVPDLRPDGCRNISYPTGLPQVSIIFI FT FVNEALSVILRSVHSVIQRTPAHLLKEIILVDDHSNNAELLENLQRFVDETNQQQRDFI FT KVVHHEKQEGLIRSRVSGWRAASAPIVALFDAHVEFSIGWAEPILHRIQEDRTRAISPS FT FDNIKYDTFEIEEYPLSAQGFDWELWCRYLNPPKSWWMQKNQTAPIRSPALIGCFVVDR FT EYFEEIGLLDEGMEVYGGENVELGIRVWLCGGSVEVIPCSRIAHIERAHKPYTEDLATH FT VRRNALRVAEVWMDEFKSHVYMAWNIPQQDSGIDIGDIRDRKALRERLRCKPFSWFLNN FT IYSEMRTYMDTIAYGVLRNSLRPDLCVDQGPDSDNIPILYICHGLTPQNVYFTSSQQLH FT VGGLSPTIDDDDNKCLVDVNSRPRLLECSYASNKHMKLSWLFTQGGSIQNKKSKRCLEL FT VESADVDHGYQLVLQKCSSQKWTITHILPGKVL" XX SQ Sequence 1964 BP; 524 A; 454 C; 528 G; 458 T; 0 other; catgagagca gaaccgctgc caaacgcgta gaggattttt gtaccagttt ctgcgcgcgc 60 tttgcacgtg gggatgttgc gatggcatgc acgaggagaa ccaaaacttt ggtgtccacg 120 tgcgtgattt taagtggcat gaccaatatt ctgtgcctgc tgtacgtcgg gtggatcacc 180 aattatgtgt ctaataacgg caacgtcaaa gttgcaggaa ggacgcacga gaaaaagttt 240 gacgatgaca gcaaagggga aaccttgagg attattgaaa gactggacag acttgagagt 300 gttgtaaatc aacacatcca agagaagcca cagtcagata tcgaggactc tgctgacctg 360 tcactctcag agactttgtt tgcacactgg ggacatgagc tggggccaga gagccgaaag 420 gtggccctca gaaagttcca gtactacggc tataatgcct acctcagtga cagactctct 480 ttggacagag ccgtgccaga cctcagacct gacggctgca gaaatatctc atacccgaca 540 ggtctgcctc aggtcagcat catcttcatc tttgtgaatg aggctctgtc tgtgatcctg 600 cgctctgttc attcagtgat tcagaggaca cctgctcacc tgctgaagga gatcatcctc 660 gtggacgacc acagcaacaa cgcagagctg ctggagaatc tgcagagatt tgtggacgag 720 accaatcagc agcagcgtga ctttattaaa gtggtccacc atgagaagca ggagggattg 780 attcgctctc gggtcagtgg atggagagct gcaagtgccc caatcgtcgc cctgtttgat 840 gcccatgttg agttcagcat tggctgggct gaacctattc ttcaccgcat ccaagaggac 900 cgaacgcggg ccatctcgcc atcatttgac aacatcaaat acgacacgtt tgagattgaa 960 gagtatccac tctctgctca agggtttgac tgggaactgt ggtgccgtta tttaaaccct 1020 cccaaatcct ggtggatgca aaagaaccaa accgcaccaa tcaggagtcc tgctctgatc 1080 ggctgctttg tagtggatag ggagtatttt gaggagattg gcctgctgga tgaagggatg 1140 gaggtttacg gcggggagaa cgtggagctg gggatcaggg tttggttgtg tggaggaagt 1200 gtggaggtca taccctgctc cagaatagct catattgaac gcgcacacaa gccctacaca 1260 gaggatctgg caacccatgt gcgcaggaac gctctaaggg tggctgaggt atggatggat 1320 gagttcaaga gccacgttta catggcctgg aacattcctc aacaggactc tgggattgat 1380 atcggtgata tcagagaccg aaaagctctc agagaaagac tccgctgtaa acctttcagc 1440 tggttcctca acaatattta ttctgagatg agaacctata tggacaccat cgcttatggt 1500 gtactgagga acagcctgag gccggatctt tgtgtggatc aaggtcccga ctccgacaac 1560 attcccattc tgtacatctg ccatggcctg acgcctcaga atgtgtactt cacaagctct 1620 caacagttgc atgtcggagg attgagtcca actattgatg atgatgacaa caagtgcctg 1680 gtggacgtga acagccgacc acgactgctg gaatgcagct acgccagcaa caaacatatg 1740 aaactctcct ggcttttcac ccagggaggc tccattcaga acaaaaagtc gaaacgttgt 1800 ttggagttgg tagaaagtgc agatgtggat catggatatc agctggtcct tcagaagtgc 1860 agcagtcaga aatggacaat cacccacata ttgcctggga aagttttata ggacatatgg 1920 gacaaatcac tggacctaca gtaaactcgg atatggtggc acac 1964 // |
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