EBI Dbfetch

ID   BC162406; SV 1; linear; mRNA; STD; VRT; 3043 BP.
XX
AC   BC162406;
XX
DT   14-JUN-2008 (Rel. 96, Created)
DT   14-JUN-2008 (Rel. 96, Last updated, Version 1)
XX
DE   Danio rerio exostoses (multiple)-like 3, mRNA (cDNA clone MGC:194089
DE   IMAGE:9037557), complete cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-3043
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-3043
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (03-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   Ensembl-Gn; ENSDARG00000026811; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000039499; Danio_rerio.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Harvard
CC   cDNA Library Preparation: British Columbia Cancer Research Center
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRCY Plate: 1 Row: B Column: 19.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3043
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_38"
FT                   /clone="MGC:194089 IMAGE:9037557"
FT                   /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo
FT                   5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole
FT                   embryo 48 hpf, whole adult fish"
FT                   /note="Vector: pCR4-TOPO reverse; Clone identification
FT                   sequence tag: GTGGTTTG"
FT                   /db_xref="taxon:7955"
FT   gene            1..3043
FT                   /gene="extl3"
FT   CDS             77..2830
FT                   /codon_start=1
FT                   /gene="extl3"
FT                   /product="exostoses (multiple)-like 3"
FT                   /db_xref="GOA:Q5U7D2"
FT                   /db_xref="InterPro:IPR015338"
FT                   /db_xref="UniProtKB/TrEMBL:Q5U7D2"
FT                   /db_xref="ZFIN:ZDB-GENE-041124-2"
FT                   /protein_id="AAI62406.1"
FT                   /translation="MQRNGGIVGNGGQPWVLRRVRLTWLSFMLFFILVFFPLIAHYYLT
FT                   TIDEAGGPDKRIFGPRPGGELCEAKHVQDLCRIRESVSEELLQLEAKRQELNGEIARLN
FT                   LRIEACKRSIDSAKQDLLQLKNVISQTEHSYKELMAQNQPKLSLPVRLLPDKDDPGYPP
FT                   PKSPQSCRLHSCFDYARCPLTSGFPVYVYDTGSYPWGEKLDPLVKQAFASSVKSSVYVT
FT                   DNPNIACLYIALVGEIQESPSSPLASPSDLEKQLKALPYWRSDGHNHLLVHLSINSLTQ
FT                   NFLYNVSTGRAAVAQSTFFERQYREGFDLVVSPLVHALSEPNFLEVPPQVPVKRKYLFT
FT                   FQGEKVESLRSSLLEAPPQSFEEEMEGDPPADYDDRIIGTLKAVQDSHLDQVLVEFTCK
FT                   NQAKPSLPTEWALCGKREDRLEVLKVSTFALVISPGDGQLVASAGCSMRLFEALEVGAI
FT                   PVVLGDHSKLPYHHLIRWSEAVIMVPKPRITELHFLLRSISDNDLLAMRRQGRFLWETY
FT                   FSTSESIFNTILASVRTSIQIPAAPIREEPAQEIPHKAGKLAGTDANLADNGDLDLGPV
FT                   EVEPPYASPRFLRNFTYTAADVYRTWNRAPGPFHLFPHTPLDPVLPSEAKFLGSGTGFR
FT                   PIGGGSGGSGKEFQAALGGNVPREQFTVVMLTYEREEVLMNSLERLNGLPYLNKVVVVW
FT                   NSPKPPSDDLLWPDIGLPIVVVRTGKNSLNNRFLPWDAIETEAILSIDDDAHLRHDEIM
FT                   FGFRVWREARDRIVGFPGRFHAWDLNHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYS
FT                   YVMPRAIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFRCPGCPQALSHDDSHF
FT                   HERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRLPHDKTKCFKFI"
XX
SQ   Sequence 3043 BP; 759 A; 759 C; 725 G; 800 T; 0 other;
     ggttgcatta tggcagctga atctcctaaa cagctgcatt cacgtatttg gttcggagga        60
     gagtgatagt tgtacaatgc agcgaaacgg aggcatcgtt gggaacggtg gccagccatg       120
     ggtactgagg cgagtacggc tcacctggct cagtttcatg ctcttcttca tcctggtctt       180
     cttccctctc attgcacatt actacctcac cacaatagat gaagcaggag gaccagataa       240
     gcgaatcttt ggcccaagac ctggaggaga gctgtgtgaa gcgaagcatg tgcaagatct       300
     ttgtcgtata cgggaatctg tcagtgaaga gctacttcag cttgaggcaa agcgtcaaga       360
     gcttaatggc gagatagccc gacttaacct acgcatcgag gcctgcaaac gtagtatcga       420
     cagtgccaaa caggacttgc tacaactcaa aaatgtcatc agccagactg agcactctta       480
     caaggaactt atggcacaaa accagccaaa attgtcattg ccggttaggc ttttaccaga       540
     caaggatgat cctggttatc ctcctccaaa gtcaccccaa agctgtagat tgcattcttg       600
     ttttgattac gctagatgtc cccttacatc gggcttccct gtctatgttt atgacacagg       660
     atcataccct tggggtgaaa agttggaccc tcttgtcaaa caagcttttg catcatccgt       720
     caaaagcagt gtatatgtga ccgataatcc aaacattgct tgtctgtaca tagctcttgt       780
     tggggaaata caagaatcac cctcctctcc gcttgcttca ccttcagacc ttgaaaaaca       840
     gctcaaggct ttgccgtatt ggaggtcgga tggtcacaac cacctgcttg tacacctttc       900
     tataaattct ctgacacaga acttcctcta taatgtgagc acgggacgag cagcagtagc       960
     acagtctacc ttttttgaac gacagtatag agaaggtttt gacttggtgg tgtctccact      1020
     agtccatgct ctgtctgagc ctaacttctt ggaggttcct ccgcaagtcc cagttaagag      1080
     gaagtacctc tttacctttc agggagaaaa agttgagtct ttgagaagca gtttgcttga      1140
     agcccctcca caatcctttg aggaggaaat ggaaggggat ccaccagcag actatgatga      1200
     tcgaatcatt ggcacactta aagctgtaca ggacagtcac ctagaccagg ttcttgtgga      1260
     gtttacttgc aagaatcaag ccaagccaag tttaccaaca gagtgggcat tgtgtggcaa      1320
     gcgtgaggat cgtttagagg tactgaaagt ctctacattt gccttggtaa tatctccagg      1380
     tgatggacag ctggtggcat ctgctggctg tagcatgaga ctttttgagg ctttggaagt      1440
     tggggcaata cctgtggtac ttggtgacca ctcaaagtta ccctaccatc atctcatacg      1500
     ctggagtgaa gcagtcataa tggtgccaaa accccgcatt acggaactac actttctgtt      1560
     gcgtagcatc tcagacaatg atcttcttgc tatgcggcga caaggacggt ttctttggga      1620
     aacatatttc tccacttcag aaagcatctt caataccatt ttggctagtg tacgtaccag      1680
     catccagatc ccagcagcac ccatacgtga agaacctgct caggagattc cccacaaagc      1740
     tggaaagttg gccgggaccg atgctaacct ggccgacaat ggtgacttag atcttgggcc      1800
     tgttgaagta gagccccctt acgcttcgcc ccgtttcttg cgtaacttca cctacactgc      1860
     tgctgatgtc taccgcacat ggaatcgtgc acctggccct ttccatctat tcccacacac      1920
     tcccctggac cctgtacttc cctcagaggc caagtttttg gggtcaggaa ctggttttcg      1980
     cccaatcggt ggaggttctg gtggatctgg taaagagttc caggccgctc ttggtggtaa      2040
     cgtcccacgg gagcagttca cagtggtcat gctcacttat gaacgagagg aggttcttat      2100
     gaactcactg gagagactaa atggccttcc ttatctcaac aaagtggtag tggtgtggaa      2160
     ttcccccaaa ccaccatcag atgatctcct ttggccagat attggtctgc ctattgtggt      2220
     ggtacgcaca gggaagaaca gcttaaacaa tcgcttcctt ccctgggatg caatcgagac      2280
     tgaggctatt ttgtctattg acgatgatgc ccatcttcga catgatgaaa tcatgtttgg      2340
     cttcagagtg tggagggagg cgagagaccg gatcgtgggc tttccgggaa ggtttcacgc      2400
     ctgggattta aatcaccaat cttggctcta caactccaac tactcctgcg agctctccat      2460
     ggtgctgacg ggtgcggcct tcttccacaa gtattacgcg tatctctatt cctacgtcat      2520
     gcctcgagcc atccgagaca tggtggatga gtacatcaac tgtgaggata tcgccatgaa      2580
     cttcctggtg tcgcatatca ctcgcaaacc cccaatcaag gtgacgtccc gttggacctt      2640
     ccgctgtccc ggctgcccac aggctctatc gcatgacgat tcgcacttcc acgagcgtca      2700
     caagtgcatc aacttcttcg taaaagttta cggatacatg ccgctgttat acactcagtt      2760
     cagagtggac tctgtactct tcaagactcg actgccccac gacaaaacca aatgttttaa      2820
     attcatttag cgggagcgtg gggacatccg gcggacgtgg gacgatctct ctctctggga      2880
     gcgggaaggg aattaaagct ttcttgtaaa tactggagga ttttactttg aactcgtctt      2940
     ccttgaagcc aagggagaac tattatgaaa cgaacgatta ccgtcaggcg ttcttgaaca      3000
     tgcgttattc atcagcaacc actgcaggct tgatttgcac cac                        3043
//