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EBI DbfetchID BC162103; SV 1; linear; mRNA; STD; VRT; 2517 BP. XX AC BC162103; XX DT 14-JUN-2008 (Rel. 96, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 2) XX DE Danio rerio glycosyltransferase-like 1b, mRNA (cDNA clone MGC:193561 DE IMAGE:9037850), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2517 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2517 RG NIH MGC Project RA ; RT ; RL Submitted (03-APR-2008) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000017058; Danio_rerio. DR Ensembl-Tr; ENSDART00000003634; Danio_rerio. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Harvard CC cDNA Library Preparation: British Columbia Cancer Research Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRCY Plate: 1 Row: N Column: 24. XX FH Key Location/Qualifiers FH FT source 1..2517 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_38" FT /clone="MGC:193561 IMAGE:9037850" FT /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo FT 5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole FT embryo 48 hpf, whole adult fish" FT /note="Vector: pCR4-TOPO reverse; Clone identification FT sequence tag: ATTTGTAC" FT /db_xref="taxon:7955" FT gene 1..2517 FT /gene="gyltl1b" FT /gene_synonym="si:ch211-206g24.1" FT /gene_synonym="si:ch211-282n12.1" FT CDS 167..2419 FT /codon_start=1 FT /gene="gyltl1b" FT /gene_synonym="si:ch211-206g24.1" FT /gene_synonym="si:ch211-282n12.1" FT /product="glycosyltransferase-like 1b" FT /db_xref="GOA:B3DFN1" FT /db_xref="InterPro:IPR002495" FT /db_xref="UniProtKB/TrEMBL:B3DFN1" FT /db_xref="ZFIN:ZDB-GENE-050419-253" FT /protein_id="AAI62103.1" FT /translation="MLCPCRGKLKLLVVSLSFVILFTWLYLLVGNSENGRSLLLSACLV FT ESTEARLLERDVLASRVREVEEENRQIRLQLSQSQGLAGQPAEGNYGNQQWVASADTGP FT EDVENTAEERANHSECSRSPTAEKCELLHVACVCAGHNASRDVVTLVKSILFHRRNPLH FT FHFITDTVANQILSTLFQSWMVPSVQVSFYDADELKSEVSWIPNKHYSGIYGLMKLTLT FT KALPSNLSKVIVLDTDITFATDIAELWAIFRKFTEKQVIGLVENQSDWYLGNLWKNHKP FT WPALGRGFNTGVILLYLERLRRMGWEQMWRLTAERELMSMLSTSLADQDIFNAFIKQNP FT VLVHQLPCFWNVQLSDHTRSEQCYTEVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFL FT EYDGNLLRRELFGCPSQASSESTVLQQALEELDEDDQCYDFRRERIMLHRVHLYFLQYE FT YSPTDDGTDITLVAQLSMDRLQMLEAICKHWEGPISLALYMSDAEAQQFLRYAQASEVL FT KNRKNVGYHIVYKEGQFYPVNLVRNVALRNVNTPYVFLTDVDFLPMYGLYDYLRKSIVQ FT LDMANTKKALVVPAFETLRYRLSFPKSKAELLSMLDMGTLYTFRYHVWTKGHAPTNYAK FT WRTATTPYKVEWEADFEPYVVVRRDCPEYDQRFVGFGWNKVSHIMELDAQEYDLIVLPN FT AFMIHMPHAPSFDISKFRSSPSYRYCLTTLKDEFHQDLSRKYGSAALKYLTAQRNI" XX SQ Sequence 2517 BP; 615 A; 670 C; 660 G; 572 T; 0 other; tcagagcttc gtcaaagcgg ccgacagaaa acatagaaga gaaggagagc gagattcggc 60 cttggcgctg agcagagaag agaggatgct gcaggagacc agtgttcgag tgagtccgac 120 ctgatcgctc catcccctcc ccccgccgct cctccacaat cccaggatgc tctgcccctg 180 tcgagggaag ctgaagttgc tggtggtgtc tctgagtttc gtcatcctgt tcacctggct 240 ttacctgctc gtggggaact cggaaaacgg acgttcgctg ctcctctctg catgtttggt 300 ggagtctact gaagcgcggc tgctagaacg ggacgtcctg gcatcacggg ttcgtgaagt 360 ggaggaggag aaccgccaga tccgtctcca actcagccaa tcgcagggtt tggccggtca 420 gcctgcagag gggaactatg ggaaccagca gtgggtggca tcggcagaca ccggtccaga 480 ggatgtggag aacacagctg aggagcgggc aaaccacagc gagtgctcac gctcgcccac 540 tgctgagaag tgtgagttgc tccacgtggc atgtgtgtgt gcaggtcaca acgccagtcg 600 agacgtggtc actctggtca aatctatctt gttccacagg agaaacccac tgcactttca 660 tttcatcaca gacacggtgg ccaatcaaat cctcagcact ctgttccagt catggatggt 720 gccgtctgta caagtcagct tctatgacgc tgatgaactc aaatcggagg tgtcgtggat 780 accaaacaaa cactattcag gaatttatgg cctgatgaag ctcactctca ccaaagctct 840 gccatccaac ctttcgaagg tcatcgttct cgatacggac atcaccttcg ccacagacat 900 cgccgagctg tgggccattt tccgcaagtt tactgagaag caggtgattg gtctggtgga 960 gaatcagagc gactggtacc tgggcaatct gtggaaaaat cacaaaccct ggccagccct 1020 ggggcgagga tttaacaccg gtgtgatttt actgtacctg gagagactgc ggcggatggg 1080 ctgggaacag atgtggagac tgacagcaga gcgagagctg atgagcatgc tttccacatc 1140 cctcgcagat caggatatat tcaacgcttt catcaaacag aacccagtgc tggtgcatca 1200 gcttccctgt ttctggaacg ttcagttatc agatcacact cgctctgaac agtgttacac 1260 tgaagtgtcc gatctaaagg tcattcactg gaactctcct aaaaagctga gggtgaaaaa 1320 caagcatgtg gagtttttcc ggaatcttta cttgacgttc ctggagtatg atgggaatct 1380 tctgcgacga gagctgttcg gatgtcccag tcaagccagc tcagagagca cagtgctcca 1440 gcaagctcta gaggagttag atgaggacga ccagtgctat gacttccgga gggagcggat 1500 catgctgcac agggtacacc tctactttct gcagtacgaa tacagtccta cagacgatgg 1560 cacggacatc acgctggtcg ctcagctctc catggacaga ctgcagatgc tggaggccat 1620 ctgcaaacac tgggaaggcc ccattagttt ggccctgtac atgtcagacg ccgaggccca 1680 gcagtttctg cggtatgccc aggcctccga agtcctcaaa aaccgcaaga atgtgggcta 1740 tcacatcgtc tacaaggagg gtcagttcta cccggtcaac ctggtgcgca atgtggcgct 1800 tcgcaacgtc aacacaccct acgtttttct gaccgatgtt gactttctgc ccatgtacgg 1860 cctctacgat tacctcagaa aaagtatagt ccagctggat atggccaata ccaagaaggc 1920 tctggttgtg cctgcctttg agacgttgag atatcgcctt tccttcccca aatccaaagc 1980 agagctgttg tcaatgctgg acatggggac tctctacacc ttcaggtatc atgtctggac 2040 aaagggtcac gcgccaacca attatgccaa atggagaaca gccacgacac catacaaggt 2100 ggagtgggag gcggattttg agccgtatgt tgtcgtgcgc agagactgtc ccgagtacga 2160 ccagaggttt gttggctttg gctggaacaa agtttcccat atcatggagc tcgatgctca 2220 ggagtatgat cttattgtgt taccaaatgc cttcatgatc cacatgcccc acgcgcccag 2280 ctttgacatc tccaagtttc gctccagtcc gagttaccgc tactgcttga ctacactaaa 2340 agacgaattc caccaagacc tttctcgaaa gtacggatcc gctgctctca agtacctcac 2400 agcacagagg aacatctgaa agctctcttt catggacttc agcacactgg agaacggctt 2460 ggattagtcg atcaaccgag gctcaaaaat gcccacacgc tgctctgcta ccacgtt 2517 // |
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