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EBI DbfetchID BC162096; SV 1; linear; mRNA; STD; VRT; 2368 BP. XX AC BC162096; XX DT 14-JUN-2008 (Rel. 96, Created) DT 14-JUN-2008 (Rel. 96, Last updated, Version 1) XX DE Danio rerio like-glycosyltransferase, mRNA (cDNA clone MGC:193545 DE IMAGE:9037694), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2368 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2368 RG NIH MGC Project RA ; RT ; RL Submitted (03-APR-2008) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000005126; Danio_rerio. DR Ensembl-Tr; ENSDART00000023917; Danio_rerio. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Harvard CC cDNA Library Preparation: British Columbia Cancer Research Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRCY Plate: 1 Row: H Column: 12. XX FH Key Location/Qualifiers FH FT source 1..2368 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_38" FT /clone="MGC:193545 IMAGE:9037694" FT /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo FT 5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole FT embryo 48 hpf, whole adult fish" FT /note="Vector: pCR4-TOPO reverse; Clone identification FT sequence tag: ACAGTTAC" FT /db_xref="taxon:7955" FT gene 1..2368 FT /gene="large" FT CDS 52..2325 FT /codon_start=1 FT /gene="large" FT /product="like-glycosyltransferase" FT /db_xref="GOA:B3DFM4" FT /db_xref="InterPro:IPR002495" FT /db_xref="UniProtKB/TrEMBL:B3DFM4" FT /db_xref="ZFIN:ZDB-GENE-061204-1" FT /protein_id="AAI62096.1" FT /translation="MLGMCRGRRKFVAASLALIFIPALTWLYLSSANITVKPLPLSPLD FT PQSSAVVGAAAEHQSLELRLRDVEEHNNALRREISRTPRVPTHSSHPSSSRHGNQLHTH FT STEEGTGDSEAKKGAAAGNSSDCVPQPVVKKCETIHIAIVCAGYNASRDVVTLVKSVLF FT HRRNPLHFHIITDSIARKILADLFHTWMVPAVHVNFYDADELKSEVSWIPNKHYSGIHG FT LMKLVLTKTLPSDLEKVIVLDTDITFATDIAELWVVFHKFKGQQVLGLVENQSDWYLGN FT LWKNHRPWPALGRGFNTGVILLLLDRLRKLKWEQMWRLTAERELMSMLSTSLADQDIFN FT AVIKQNPFLVHQLPCYWNVQLSDHTRSEKCYKDVSDLKVIHWNSPKKLRVKNKHVEFFR FT NLYLTFLEYDGNLLRRELFGCPSETDHNSENLQKTLSELDEDDPCYEFRRERFTVHRTH FT VYFLHYEYEPTVDNTDVTLVAQLSMDRLQMLEAICKHWEGPISLALYLSDAEAQQFLRY FT AQGSEVLMSRSNVGYHIVYKEGQFYPVNLLRNVAMGQVNTPYMFLSDIDFLPMYGLYEY FT LRKSVVQLDMGNTKKALVVPAFETLRYRLSFPKSKAELLSQLDMGTLFTFRYHVWTKGH FT APTDFAKWRTATTPYRVQWEADFEPYVMVRRESPEYDRRFVGFGWNKVAHIMELDAQEY FT EFVVLPNAYMIHMPHAPSFDITKFRSNKQYRACLKTLKEEFQQNMSRRYGFAALKYMTV FT DNNS" XX SQ Sequence 2368 BP; 552 A; 665 C; 644 G; 507 T; 0 other; cgctgatgcc cacatagagg tctctgaaca gacaccctct ggctgcagag gatgctggga 60 atgtgtcgcg ggcgcaggaa gtttgtggct gcctccctcg ccctgatctt catcccagcc 120 ctcacctggc tctatctgtc atccgcaaat atcacagtca aaccgctgcc tctgtcgccg 180 ctggatcccc agtcgtctgc ggtggtcggt gcggctgccg agcatcagtc tttagagctg 240 aggctccggg acgtggagga gcacaacaat gcactgcggc gagagattag caggactccc 300 agggtcccga cccacagcag ccatccgagc agcagtcgcc acggcaacca gttgcacacc 360 cactccacag aagagggtac aggtgacagt gaggctaaaa aaggagctgc cgccggcaac 420 agctcggact gtgtgcctca gcctgtggtg aagaaatgcg agaccattca tattgccatc 480 gtgtgcgcgg gctacaacgc aagcagggac gtcgtcactt tggtcaagtc ggttcttttt 540 cacagacgaa acccactgca cttccatatc atcaccgatt ccatcgctcg gaagatcctc 600 gccgacctct tccacacctg gatggtgcca gccgttcatg tcaacttcta tgacgctgat 660 gagctgaagt ctgaggtgtc ttggattccc aacaagcatt attccggcat ccacggcctg 720 atgaagctgg tgctgaccaa gacgctgccc tcagacctgg agaaggtcat cgtcctggac 780 accgacatca cattcgccac ggacatagcc gagctgtggg tcgtcttcca caagtttaaa 840 ggccagcagg ttcttggttt ggtggagaat cagagcgact ggtatctggg taacctgtgg 900 aagaaccatc ggccgtggcc agctctgggc aggggcttta acacgggtgt gattctgctg 960 ttgttggatc gtttgaggaa gctgaaatgg gaacagatgt ggcggctgac ggcagagaga 1020 gagctcatga gcatgctgtc tacgtcactc gctgaccagg acatcttcaa cgctgtgatc 1080 aagcagaacc cattcctggt gcaccaactg ccctgctact ggaacgtcca gctgtctgac 1140 cacacccgct ctgagaagtg ctacaaggac gtgtccgacc tcaaggtgat ccactggaac 1200 tctccgaaga agctgcgcgt gaagaacaaa cacgtggagt ttttcaggaa tctctatctg 1260 accttcctgg agtacgatgg aaatctgctg aggcgagagc tcttcggctg tcccagtgaa 1320 accgaccaca actcagagaa cctccagaag actctgtcgg agctggatga agatgacccg 1380 tgttatgagt ttcgccgtga acgattcacc gttcatcgca cacatgttta cttcctacac 1440 tacgagtatg aacccactgt ggataacact gacgtgacgc tggtggccca gctttctatg 1500 gacagactgc agatgctgga ggccatctgt aaacactggg aaggacccat cagtttggcg 1560 ctctacctct cagacgctga agcgcagcag ttcctgcggt acgctcaggg ctccgaggtc 1620 ctgatgagca ggagcaacgt gggataccac atcgtctaca aagagggcca gttctacccc 1680 gttaacctgc tgcgcaatgt tgctatgggg caggtcaaca ctccctacat gttcctgtcg 1740 gatatcgact tcctgcctat gtatggactc tatgagtacc tcaggaaatc tgtggtccag 1800 cttgatatgg gaaacactaa gaaggctctg gtggttccgg cgtttgaaac gcttcgctat 1860 cggctctcct tccccaaatc taaagcagag ctcctgtcgc agctggacat gggcaccctg 1920 ttcacattca gatatcacgt gtggacgaaa ggtcacgctc cgacagactt cgccaaatgg 1980 agaactgcca cgacaccgta ccgcgttcag tgggaagcgg actttgagcc gtacgtgatg 2040 gtgaggcggg aaagcccaga gtacgaccgc cgcttcgtgg gcttcggctg gaataaagta 2100 gcgcacatca tggagctgga cgctcaggag tatgagttcg tggttctgcc caatgcctac 2160 atgatccaca tgccgcacgc acccagtttc gacatcacca agtttcgctc gaacaaacag 2220 taccgcgctt gcctgaagac gctgaaggag gagtttcagc agaacatgtc tagacgctac 2280 ggcttcgctg cgctcaaata catgacagtg gacaacaaca gctagccgag cgctcggacc 2340 tgcaaaccaa tgaagcgtct gcggttga 2368 // |
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