EBI Dbfetch

ID   BC161349; SV 1; linear; mRNA; STD; VRT; 1727 BP.
XX
AC   BC161349;
XX
DT   19-MAR-2008 (Rel. 95, Created)
DT   18-OCT-2008 (Rel. 97, Last updated, Version 9)
XX
DE   Xenopus tropicalis hypothetical protein LOC100145597, mRNA (cDNA clone
DE   MGC:186171 IMAGE:6976386), complete cds.
XX
KW   MGC.
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1727
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1727
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1727
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (17-MAR-2008) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Robert M. Grainger
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 328 Row: b Column: 15
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Hexamer frequency ORF
CC   analysis, Similarity but not identity to protein.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1727
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Emb7"
FT                   /clone="MGC:186171 IMAGE:6976386"
FT                   /tissue_type="Embryo, Silurana tropicalis, tailbud (stages
FT                   20-27)"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:8364"
FT   gene            1..1727
FT                   /gene="LOC100145597"
FT   CDS             13..1326
FT                   /codon_start=1
FT                   /gene="LOC100145597"
FT                   /product="LOC100145597 protein"
FT                   /db_xref="GOA:B1H3C9"
FT                   /db_xref="InterPro:IPR005013"
FT                   /db_xref="UniProtKB/Swiss-Prot:B1H3C9"
FT                   /protein_id="AAI61349.1"
FT                   /translation="MASLRVSVLLVAASCLLLGSGLRAGPRTLVLLENINLRETHSLFF
FT                   RSLSDRGFDLSFRTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINIETISSFIDGG
FT                   GSVLVAASSDIGDPLRELGSECGIEFDEDKTAVIDHHNYDISDPGQHSLIVADSESLLK
FT                   APTIVGKAPLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKNT
FT                   LLIAGLQARNNARVVFSGSMDFFSDAFFNSAVQKAAGGSNRYAKTGNYELAVALSRWVF
FT                   KEEGVLRVGQVSHHRVGESSPPSAYTVTDLVEYSIVIEQLSNGKWVPFDGDDIQLEFVR
FT                   IDPFVRTFLKKNGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSTTQVSVRPLQHTQY
FT                   ERFIPSAYPYYASAFSVMFGLFIFSIVFLHMKEKEKSD"
XX
SQ   Sequence 1727 BP; 401 A; 462 C; 430 G; 434 T; 0 other;
     cgggcgggta acatggcttc tctccgtgtg tctgtgctgc ttgtggccgc ctcatgcctc        60
     ctgctggggt ctgggctccg ggccgggccc cgcactctcg tcctgctgga gaacatcaac       120
     ctacgggaga cgcactctct cttcttccgc agtctctctg acagaggatt tgacctttcc       180
     tttcgaacag ccgatgatcc aagcctgtcc ctgatcaagt atggagagtt cttgtacgac       240
     aatctgatca tcttctcccc ctctgtcgaa gattttggtg gaaacatcaa cattgagact       300
     atcagctcat ttatcgacgg aggcggcagt gtgctggttg cagcaagctc agatatcggg       360
     gaccccctgc gggagctggg cagcgaatgt ggcattgagt ttgatgaaga caaaacagct       420
     gtgattgacc accataacta tgatatctcc gacccgggcc agcactcact tattgtggcc       480
     gactctgaga gccttctgaa agctccaacc attgtgggaa aggctcctct gaaccccatt       540
     ctcttcaggg gtgttggcat ggtggccgat ccggacaatc ctctggtact ggacattctg       600
     actggctctt ccacctccta ctcctttttc ccggataagc caatcacaca gtacccacac       660
     gctgtaggga agaacacgct cctgatcgca gggctacagg ccagaaataa cgcccgtgtc       720
     gtgttcagcg gctccatgga tttcttcagt gacgccttct ttaactccgc cgtacagaaa       780
     gccgccgggg gctccaaccg gtatgccaaa actggcaact acgagctggc cgtggccctg       840
     tctcgctggg tgtttaagga agagggcgtc ctgagagtcg ggcaagtctc ccatcaccgc       900
     gtaggggaat cctctcctcc aagcgcctac actgtcactg accttgtgga atacagcatc       960
     gtgattgaac agctgtccaa tggaaagtgg gtgccgtttg atggggacga tatccagctg      1020
     gagtttgtcc gtattgatcc atttgttagg accttcttaa agaagaatgg agggaagtac      1080
     agtgtccagt tcaagctccc ggatgtttat ggtgtgttcc agttcaaggt ggattataac      1140
     aggttggggt atacacacct gtactctacc acacaggtgt cggtgcgccc cctgcagcac      1200
     acccagtacg agcgcttcat cccctcggcc tacccgtact acgccagcgc cttctccgtc      1260
     atgttcggac tctttatatt cagcatcgtc ttcctacaca tgaaggagaa agagaaatct      1320
     gactaaggta gtgcacttac gtgaaatctc caccagaggg cgcctacacc tggcccataa      1380
     gatccttcat tggccggcat tcagctctga tttgggatgg ttttttttgg tttaaaaaaa      1440
     ttaaaattaa taattaactt tttttactgt gctacgttga gagagaggga gcggccggcc      1500
     ccagcacaga cggggttaat caccagaggg gagagcatga aattcacccg cccagggaac      1560
     tgcactgatc acattcccgg cagtcgctcg tcgctttgtg tcactgtgga tgtattttta      1620
     tttcattcgt tttgtcgttg gactgggatg aggggcactt gaacctttgt aataaaatct      1680
     cttccccccc cccctaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa                    1727
//