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EBI DbfetchID BC161346; SV 1; linear; mRNA; STD; VRT; 2269 BP. XX AC BC161346; XX DT 19-MAR-2008 (Rel. 95, Created) DT 18-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Xenopus tropicalis hypothetical protein LOC100145594, mRNA (cDNA clone DE MGC:186161 IMAGE:5307637), complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-2269 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2269 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2269 RA Klein S., Gerhard D.S.; RT ; RL Submitted (17-MAR-2008) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Robert M. Grainger CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 328 Row: a Column: 4 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2269 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb5" FT /clone="MGC:186161 IMAGE:5307637" FT /tissue_type="Embryo, Silurana tropicalis, gastrula (stages FT 10-13)" FT /note="Vector: pCMV-SPORT6.1" FT /db_xref="taxon:8364" FT gene 1..2269 FT /gene="LOC100145594" FT CDS 314..1894 FT /codon_start=1 FT /gene="LOC100145594" FT /product="LOC100145594 protein" FT /db_xref="GOA:B1H3C6" FT /db_xref="InterPro:IPR006759" FT /db_xref="UniProtKB/TrEMBL:B1H3C6" FT /protein_id="AAI61346.1" FT /translation="MRCRNGSLLTFIALAAFLSLSWYAAFNGDRANGGELYEKQFFDLQ FT QRLYLAEQENQKRSRDLSTVLDEIKRAVEEKRNAFENHTVEEIRWKVLNMSSRLPVQFA FT NIYMFLPHLIGHEDQMRPNVLYGQDRTGVSIVFGIPTVKRDKQSYLMDTLNSIFSELTA FT SEKSDCVVIVFIAEVNHDYVNTLANNIKNNFPKEIESGVLEIVSPPVNYYPDLSNIRET FT FGDSKERVRWRTKQNLDYSFLMLYAQPKGTYYLQLEDDIVAKPNFFQYLKSFATQQTSE FT DWIILEFSQLGFIGKMFRAKDLPFLTEFFLMFYKDKPIDWLLDHFLWVKVCNPEKDAKH FT CDRQKSNLRIRYRPSLFQHIGTHSSLSGKIQNLKDKDFDKKLLYKAHANPPAKVSTSLK FT IYQQYNLEKAYVGQECFWAFSPVAGDFILFEFTEPSEVKGYLFKSGNIEHPGDKLFNTT FT VEVLPAKNISKADFPKSEDGYLQLGNFVSGVAEGVISPSLGKIKAIRLKILSESPVWAL FT LSEIFIKMN" XX SQ Sequence 2269 BP; 727 A; 441 C; 478 G; 623 T; 0 other; acagctctga gacctggcca aggtagagtc agtatccacc tgaggcaaac ctgatgcaaa 60 cacaaggcgg ccgagagaag cgaagagggg atgtccattg tatgagctca cagcacagaa 120 ccctcctcct cctctataca catgcgactg gctgagggga acagaccgaa gtgcaaagtc 180 tgacagggag gcgagctcac tgccgcttgt gcctcaactg gcgcttcccc agcagaacca 240 gaagggaata gagtgccgct gcacagcaca gactctggcc ggtgtatggg tgctggcagg 300 ggagctatgt gagatgaggt gcaggaatgg cagtctgctg actttcattg ccttggctgc 360 tttcctctct ctgtcctggt acgcagcgtt taacggggat agagcaaatg gaggagaact 420 gtacgagaaa caattttttg atctccagca gaggttgtat ctggcagagc aagagaatca 480 gaagagatct cgggacctga gtacggttct tgatgaaatt aaacgagctg tagaagaaaa 540 gaggaatgct tttgagaacc acacagttga agagatacga tggaaagttt tgaatatgtc 600 cagcagactt cctgtgcaat ttgcaaacat ctatatgttc ctgcctcatc taataggaca 660 tgaagaccag atgcgaccga atgtactcta tggacaagat agaactggtg tttccattgt 720 gtttggcatt cccacggtga agcgagacaa acagagctac ctgatggata ctttaaattc 780 tattttctca gagttgactg caagtgaaaa aagtgattgt gttgtgattg tttttatagc 840 agaggttaac cacgactatg tcaatacatt agctaacaat attaaaaata attttcctaa 900 agagattgaa tctggtgtcc tggagattgt ctctccccct gtaaactatt accctgattt 960 atccaacatt agggaaacct ttggtgattc caaagaaaga gtaaggtgga gaacaaagca 1020 gaacttggac tatagtttcc tcatgctata cgctcagcca aagggaactt attatttaca 1080 gttagaagat gatatcgtcg caaaacctaa tttttttcag tatctgaaaa gctttgccac 1140 tcagcaaact tctgaggact ggataatact tgaattctct cagcttggtt ttattggtaa 1200 aatgttccga gctaaagatc tgcccttttt aacagagttc ttcctaatgt tctacaaaga 1260 taaacctata gactggctcc ttgatcattt tttgtgggtc aaagtatgca atcctgaaaa 1320 agatgctaaa cactgtgatc gccaaaagtc aaacctacgc attcgatatc gtccatccct 1380 gtttcagcac ataggtactc actcttctct ctcaggaaaa attcagaacc taaaggataa 1440 agattttgat aaaaaactgc tttacaaagc tcatgcaaac ccaccagcaa aagtgagcac 1500 aagcctcaag atttaccagc agtacaacct tgagaaagcc tacgtgggcc aggaatgctt 1560 ctgggccttc tcccctgttg ctggcgattt tattttgttt gaatttacag aaccttccga 1620 agtaaaaggg tacttgttta aaagtgggaa catagaacac cctggtgata aattgttcaa 1680 caccacagtt gaagttttac ctgcaaagaa cattagcaaa gctgattttc caaaaagtga 1740 agatggctat ttacagttag gcaattttgt cagtggagta gccgagggag ttataagccc 1800 ttcattagga aaaatcaaag caattcgttt aaagattctc tcggaatctc ctgtttgggc 1860 tttgctcagt gagatcttca tcaagatgaa ctaaaggaag ctattactac tgaaacaaat 1920 tcttcacaca ccggtgctgt gcaaaataat ttatggacca cacagaactc ttccaccaag 1980 aaaataatga aggaaaggct acaaagcttc tattttttac gcttaaaaaa cgttatttat 2040 aaatgactaa atgaagataa tttttcttta aggatgaatt tttatacagt ttttgttgga 2100 ctttattgaa atatttttca aaacaggctc acaggacttt acaacatgac caaagatcag 2160 acaagtctga tagaattgta caatttatgt ttgctttttt tttgtaactg agaaatacaa 2220 ctttctgggg aattttaaaa gaaaaaaaaa aaaaaaaaaa aaaaaaaaa 2269 // |
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