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EBI DbfetchID BC161239; SV 1; linear; mRNA; STD; VRT; 2566 BP. XX AC BC161239; XX DT 19-MAR-2008 (Rel. 95, Created) DT 18-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Xenopus tropicalis hypothetical protein LOC100145551, mRNA (cDNA clone DE MGC:185609 IMAGE:8925798), complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-2566 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2566 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2566 RA Klein S., Gerhard D.S.; RT ; RL Submitted (17-MAR-2008) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Timothy Martin Flajnik CC cDNA Library Preparation: Joint Genome Institute CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 333 Row: k Column: 24 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2566 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="ElectroMAX DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_tropThy1" FT /clone="MGC:185609 IMAGE:8925798" FT /tissue_type="Thymus, adult" FT /note="Vector: pCS107" FT /db_xref="taxon:8364" FT gene 1..2566 FT /gene="LOC100145551" FT CDS 296..2524 FT /codon_start=1 FT /gene="LOC100145551" FT /product="LOC100145551 protein" FT /db_xref="UniProtKB/TrEMBL:B1H342" FT /protein_id="AAI61239.1" FT /translation="MASFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQHESSSM FT LREQILDLSKRYIKALAEENRNVVDGPYVGTMTAYDLKKTLAVLLDNILQRIGKLESKV FT DNLVINGTGTNSTNISTTAIPSTGAGEKLNVADIINGAQEQCELPPMDGYPHCEGKIKW FT MKDMWRSDVCYSNYGVDGSTCSFFIYLSEVENWCPRLPWRAVNPNDEADRKNLAEIRTD FT FDDLYKVMAKHEEFRWMTLRIRRMDDTWIEAIKSLADKQNLEKRKRKKILIHLGLLTKE FT SGFKIAENAFSGGPLGELVQWSDLITSLYLLGHDVRISASIAELKEIMKKVVGNRSGCP FT TQGDKVVELIYIDIVGLSQFKKTLGPSWVHYQCMLRVLDSFGTEPEFNHAHYAQSKGHK FT TPWGKWNLNPQQFYTMFPHTPDNSFLGFVVEQHLNASDIRHMNDIKRQNQSLVYGKVDN FT FWKDKHSYLDIIHTYMEVHGTVHEKGTLYMPSYVKNHGILSGRDLQFLLRETKLFVGLG FT FPYEGPAPLEAIANGCAFLNPKFNPPKSSRNTDFFKGKPTLRELTSQHPYAEVYVGKPH FT VWTVDINNREEVEKAVKEILNQKNEPYLPYEFTCEGMLQRVNAFIEKQDFCHGQVMWPP FT LSALQVKIAEPGKSCKQVCQEEQLICEPSYFQHLNKDTDLAKFGVRCQSSETANDIVVP FT SLDEKRNHCVLQGDLLLFSCAGSHSNHKRVCPCRDYMKGQVALCKDCL" XX SQ Sequence 2566 BP; 674 A; 644 C; 720 G; 528 T; 0 other; gcgctgcggg tccgggggct gcaaggtgct gggtgcaggg ggaggtacag atgggcaatg 60 gaaggaaggt gcccctgtca tgatgggagc tgctgccggt gtgaggctgc cctagtcgga 120 aggaggagac acgatagccc ggctctgcag gctggtacca gcggcgatgt ggagttgaag 180 agttccggcc agacgagcag cccgggggat aatggacatt aatgcgatgg ctgtgcgcgc 240 tctccgctct ctctgaggtc gttcccgcgt cggactgagc gctcgcaaaa gggcaatggc 300 ctccttcacc ccttggaaac tgtcgtccca gaagctgggc ttcttcctgg tgactttcgg 360 cttcatttgg ggcatgatgt tgttgcattt caccatacag cagcggactc agcacgagag 420 cagctccatg ctccgagagc agattttgga tcttagcaag agatatatca aggcgctggc 480 cgaggagaac aggaacgtgg tggatggtcc atatgtcggc accatgactg cgtacgatct 540 gaaaaagact cttgctgtgc tgcttgacaa tattctccag cggattggca aactggagtc 600 caaggtggat aatcttgtga taaatgggac agggacaaac tctacgaaca tcagcaccac 660 ggccattccc agcactggcg ccggggagaa actcaatgta gctgatatca ttaacggagc 720 ccaggaacag tgtgaattgc ctcccatgga tggctaccct cattgtgagg gaaagatcaa 780 gtggatgaaa gatatgtggc gatcggatgt ttgctactct aactatggcg tcgacggatc 840 cacctgctcg ttctttattt acctcagtga ggttgaaaac tggtgccccc gactcccgtg 900 gcgagctgtg aaccccaacg acgaagccga cagaaagaac ctggctgaaa tccgcaccga 960 cttcgacgat ctttacaaag tcatggcgaa gcacgaggag tttcggtgga tgaccctgcg 1020 aatcagaagg atggatgaca cttggataga agccatcaag tcgctggcag ataagcagaa 1080 tctggagaaa cggaagagga aaaagatcct catccatctc gggctgctga caaaggaatc 1140 cggattcaag attgccgaaa atgcgtttag cggtggccct ctcggagaat tagtgcagtg 1200 gagtgactta attacatcgc tttacttact gggccatgat gtgaggattt ctgcttcaat 1260 agccgagctg aaagagataa tgaagaaagt ggtcggaaat aggtccggtt gccctacaca 1320 aggagacaaa gtggtggaac ttatttacat tgatatcgtg ggactctcgc agttcaaaaa 1380 gactctcggc ccctcctggg ttcattacca gtgcatgctg cgcgttctgg attcctttgg 1440 aaccgagccc gagtttaacc acgcccacta tgcgcagtcg aaaggccaca aaactccatg 1500 gggcaaatgg aaccttaacc ctcagcagtt ctacaccatg ttccctcata caccagacaa 1560 cagcttcctg ggcttcgtgg tggagcagca cctgaacgcc agtgacatca gacacatgaa 1620 tgacatcaag cggcagaacc aatcactggt ctatggcaag gtggataact tctggaagga 1680 caagcattcc tacctggata tcatccacac gtacatggag gtccacggca ccgtgcacga 1740 gaagggaacc ctttacatgc ccagttacgt caagaaccac ggcatcctca gtgggcggga 1800 cttgcagttc ctcctccggg aaacaaaatt gtttgtaggc ctgggcttcc catacgaagg 1860 gccggctcct ctggaagcca ttgccaatgg ctgtgctttt ctcaacccca aattcaaccc 1920 accgaaaagc agcaggaata cggatttctt taaagggaaa ccgaccctac gagagctgac 1980 gtcccagcac ccatacgcag aggtgtacgt agggaaaccg cacgtctgga ctgtggatat 2040 taacaatcgg gaggaagtgg aaaaggcggt gaaagagatt ctgaatcaga agaatgagcc 2100 ctatctgccc tatgagttca catgtgaggg gatgctccag agggtcaacg ccttcataga 2160 aaaacaggac ttctgtcacg ggcaagtgat gtggccgcca ttaagcgcgc tgcaggtgaa 2220 aatcgcagaa ccaggaaagt cgtgcaaaca agtgtgccag gaggagcagc tgatctgcga 2280 gccgtcctac ttccagcacc tcaacaagga cacagacctg gctaagttcg gggtccgatg 2340 ccagtcgtcc gaaaccgcga acgacattgt ggtcccgtca ttggacgaga agcgaaacca 2400 ttgtgttcta cagggcgacc ttctgctctt cagctgcgcc gggtcccatt ccaaccacaa 2460 acgcgtctgc ccctgcaggg actacatgaa gggacaggtg gcgctgtgca aagactgcct 2520 atagcagagg ggcagccgcc atggataagc taaaaaaaaa aaaaaa 2566 // |
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