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EBI DbfetchID BC155871; SV 1; linear; mRNA; STD; VRT; 2008 BP. XX AC BC155871; XX DT 05-DEC-2007 (Rel. 94, Created) DT 18-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Xenopus laevis asparagine-linked glycosylation 3 homolog (yeast, DE alpha-1,3-mannosyltransferase), mRNA (cDNA clone MGC:181615 IMAGE:8531459), DE complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-2008 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2008 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2008 RA Klein S., Gerhard D.S.; RT ; RL Submitted (01-DEC-2007) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Raphael Thuret, Albert Chesneau, Laurent Sachs CC and Nicolas Pollet CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 324 Row: b Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: CC 118835750. XX FH Key Location/Qualifiers FH FT source 1..2008 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_limb_m" FT /clone="MGC:181615 IMAGE:8531459" FT /tissue_type="Forelimbs and hindlimbs, metamorphosis - FT Niewkoop and Faber stages 54 to 61, pooled, normal, FT undetermined sex" FT /note="Vector: pCS111" FT /db_xref="taxon:8355" FT gene 1..2008 FT /gene="alg3" FT CDS 50..1393 FT /codon_start=1 FT /gene="alg3" FT /product="alg3 protein" FT /db_xref="GOA:A9JS09" FT /db_xref="InterPro:IPR007873" FT /db_xref="UniProtKB/TrEMBL:A9JS09" FT /protein_id="AAI55872.1" FT /translation="MAPAAGVRKKGAAAVGFPVPRALTDTIKGAWQNKQQLLTDPRHTA FT LLGVFLCLAEVGVSHWVIQSVPYTEIDWKAYMDEVEGVLNGTYDYTQLKGETGPLVYPA FT GFVYIFSIFYYLTEHGSNIRLAQYIFAALYLLTLFLVFRIYVVTKKVPPYVFFFMCCAS FT YRVHSIFLLRLFNDPVAMVILFFSINLLLQDHWNWACFFYSLAVSVKMNVLLLAPGLLY FT LLLCRFGLLRSIPKLCICAVLQVLLGLPFLLENPTGYLIRSFDFGRHFLFQWTVNWRFL FT PEFVFQHRAFHLALLTAHLAALLLFCVHRWPRRSGQSLLALLKDPAKRKPSSHRLTANK FT IIFVLFSSNFLGVMFSRSLHYQFYVWYFHSLPYLLWCTGTRVLPGLAKILILGLIELSW FT NTFPSTALSSGILHLCHGAILLHLWFGVPPDETWASRPTTHTPTKRKD" XX SQ Sequence 2008 BP; 489 A; 462 C; 419 G; 638 T; 0 other; ggcttcttgt ttcagtacgg ccctagaggc ggcggacacg ttgtcaagca tggcaccggc 60 agccggtgtt cggaagaaag gtgctgcagc cgtcgggttt cccgtgcccc gggcactgac 120 tgacactatt aaaggggcct ggcaaaacaa acagcaacta ctgactgacc cccgtcacac 180 cgcgttgctc ggtgtcttcc tgtgcttggc ggaggtgggg gtctcccact gggtcatcca 240 gagcgtcccc tacactgaga ttgactggaa agcttacatg gatgaagttg agggtgtgtt 300 gaatggcaca tatgattata cccagttaaa gggggagacc gggccccttg tgtatcccgc 360 aggattcgta tatattttca gtatatttta ttacctaaca gaacatggta gcaacatccg 420 cctggctcag tacatctttg ctgccttgta tcttctaaca ctgttccttg tgttccgtat 480 ctacgttgtc accaaaaagg taccccccta tgtgtttttc ttcatgtgct gtgcctcata 540 cagagtgcac tccatcttct tactgcgcct ttttaacgac cctgtggcaa tggttatcct 600 tttcttctct atcaacctcc tgctgcagga tcactggaac tgggcatgct tcttctatag 660 tttggcagtg tctgttaaga tgaatgttct gctgctggca cctggattac tgtatcttct 720 gctctgccgt tttggcctcc ttcgctctat tcccaaactt tgcatttgtg cagtactaca 780 ggtgttactg ggccttccat tcctgctgga aaatcccact ggttacctta tccgctcctt 840 tgattttggg aggcactttc tttttcagtg gacagtgaat tggcgtttcc ttccagagtt 900 tgtttttcag catcgagcat ttcacctggc actgctcaca gcccaccttg cagcccttct 960 gctgttctgt gtgcatcgtt ggccccgcag atctggacaa agtctattgg cactactaaa 1020 ggatccagca aagaggaagc cttcatcaca caggctaaca gcaaataaga taatctttgt 1080 gctgttctcc agtaacttcc taggagtgat gtttagtcgc tctttgcact atcagttcta 1140 tgtctggtat tttcactcac tgccatacct cctgtggtgc actggcacaa gagttctgcc 1200 gggacttgct aagattttaa ttcttggtct gattgaactg tcgtggaaca catttccctc 1260 cactgcactg agctcaggca ttctccattt gtgtcatgga gcgattcttt tgcatctgtg 1320 gtttggtgtt cctcctgatg agacatgggc ctctcggcct acaacacata cacctaccaa 1380 gagaaaggac tgattattcc tatcgaatca atgtcatcca cacagttttg tggtttcaaa 1440 cacaatgtta aagcaaaacg aaaggaatgt gttacatata aaaatgattt attttttgtg 1500 cgagagggat tgtgtatttt ttttccttat aaatagggtc agtgtctaac tgcaaattag 1560 aaaaaaaaaa aaaattttac aggctaatgt ttcacttgca catgtatggt tactagatca 1620 attttccacc acatcatttt aaatctgtgc cactcaggaa gaaaaatgta taatgatagt 1680 cactatttat tgatctggtg gggggttgtt tgggcctctg tgtagttgaa atgccaattc 1740 ctattttttt ttttttttat cccaatccag aaatactgat catacatagg cagattttgt 1800 cacaactctc caaacaatct tatccgcgat tcattcaatg gtttacaata tgtgaggaga 1860 cttttgttgt atctgtgtca tgtattaact gatatattaa ctgatggcta tgttctcctt 1920 gtttacttat acatgtgacc caaccctgcc atgcacagta aatgacgatt atctgattcc 1980 aaaaaaaaaa aaaaaaaaaa aaaaaaaa 2008 // |
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