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EBI DbfetchID BC154933; SV 1; linear; mRNA; STD; VRT; 1563 BP. XX AC BC154933; XX DT 07-NOV-2007 (Rel. 93, Created) DT 18-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Xenopus tropicalis hypothetical protein LOC100127746, mRNA (cDNA clone DE MGC:181324 IMAGE:8931739), complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-1563 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-1563 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-1563 RA Klein S., Gerhard D.S.; RT ; RL Submitted (02-NOV-2007) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Timothy Martin Flajnik CC cDNA Library Preparation: Joint Genome Institute CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 323 Row: n Column: 23 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..1563 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="ElectroMAX DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_tropThy1" FT /clone="MGC:181324 IMAGE:8931739" FT /tissue_type="Thymus, adult" FT /note="Vector: pCS107" FT /db_xref="taxon:8364" FT gene 1..1563 FT /gene="LOC100127746" FT CDS 16..1356 FT /codon_start=1 FT /gene="LOC100127746" FT /product="LOC100127746 protein" FT /db_xref="GOA:A8WH14" FT /db_xref="InterPro:IPR007873" FT /db_xref="UniProtKB/TrEMBL:A8WH14" FT /protein_id="AAI54934.1" FT /translation="MAPASGVRKKGAAAGRLPGTRALTDALKGAWQNKQQLLTDPRHTA FT LLGVFLCLAEVGVTHWVIQRVPYTEIDWKAYMDEVEGVLNGTYDYTQLKGETGPLVYPA FT GFVYIFSIFYYLTEQGSNIRLAQYIFAALYLLTLFFVFRIYVVTKKVPPYVFFFMCCAS FT YRVHSIFLLRLFNDPVAMVILFFSINLLLQDHWNSACFFYSLAVSVKMNVLLLAPGLLY FT LLLCRFGLLHSIPKLCICAVLQVLLGLPFLLENPTGYLIRSFDFGRQFLFQWTVNWRFL FT PEFVFQHRAFHLALLTAHLATLLLFCVHRWPRSGQSLLALLKDPAQRKPSSHRLTANKI FT IFVLFSSNFLGVMFSRSLHYQFYVWYFHSLPYLLWCTGTRILPGLAKILILGLIELSWN FT TFPSTALSSGTLHLCHGAILLHLWFGVPPDETWAPRPTTHTPTKRKD" XX SQ Sequence 1563 BP; 383 A; 381 C; 335 G; 464 T; 0 other; gacacgttgt caagcatggc accggctagt ggcgttcgaa agaaaggtgc tgctgccggc 60 aggcttcccg ggacccgggc actgactgac gctttgaagg gggcctggca aaacaaacag 120 cagctactga cggacccccg gcacaccgcg ttgctcggtg tcttcctgtg cttggcggag 180 gtgggggtca cccactgggt catccagaga gtcccctaca ctgagatcga ctggaaagct 240 tacatggatg aagttgaggg tgtgttgaat ggcacatatg attataccca gttaaagggg 300 gagactggac cccttgtgta tcctgcagga ttcgtatata ttttcagtat attttactac 360 ctaacagaac aaggtagcaa cattcgcctg gctcagtaca tctttgctgc cctttatctt 420 ctaacactgt tctttgtgtt ccgtatctac gtcgtcacca agaaggtgcc cccctatgtg 480 ttttttttca tgtgctgtgc ctcctacaga gtgcactcta tcttcttact gcggctcttt 540 aatgaccctg tggcaatggt tatccttttc ttctctatca acctcctgct gcaggatcac 600 tggaattcgg catgcttctt ctatagtctg gctgtgtcag ttaagatgaa tgtgctgttg 660 ctggctcctg gattgcttta tcttctgctc tgccggtttg gcctactgca ctccatcccc 720 aaactttgca tttgtgcagt acttcaggtg ttattgggcc tcccattcct actggaaaat 780 cccactggtt accttatccg ctcctttgat tttggaaggc aatttctctt tcagtggaca 840 gtgaattggc gtttccttcc agagtttgtg tttcagcatc gagcatttca tctggcactg 900 cttacagctc accttgcaac ccttctgctg ttttgtgtgc accgttggcc ccgatctgga 960 caaagtctct tagcgctact gaaggatcca gcacagagga aaccttcatc acacaggcta 1020 acagcaaata agataatatt tgtgctgttc tccagtaact ttctaggagt aatgtttagt 1080 cgctctctgc actatcagtt ctacgtgtgg tattttcact cactaccata tctcctgtgg 1140 tgcactggca ccagaatact tccaggactt gctaagattt tgattcttgg cctgattgaa 1200 ctgtcttgga atacatttcc ctccactgca ctcagctcag gcacactcca tctgtgtcat 1260 ggagcaattc tcttgcattt atggtttggt gttccgcccg atgagacatg ggcccctcgt 1320 cccacaacgc atacacctac caagagaaag gactaagtat tcctattgaa ttgcagccat 1380 cctgcagaaa accacaccgt tttgcagttc caaacacaat gttaaagcaa atcaaagaaa 1440 agtggtacat ataagaatga tttatttttt tgtgcgagag gtattgtctt ttttcctaat 1500 aaataaggat agtgtctcta aaaaaaaaaa aaaaaaaaaa aaaaaaataa aaaaaaaaaa 1560 aaa 1563 // |
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