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EBI DbfetchID BC150376; SV 1; linear; mRNA; STD; VRT; 1559 BP. XX AC BC150376; XX DT 18-JUL-2007 (Rel. 92, Created) DT 18-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Danio rerio tryptophan 2,3-dioxygenase, mRNA (cDNA clone MGC:171685 DE IMAGE:7900646), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1559 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1559 RG NIH MGC Project RA ; RT ; RL Submitted (13-JUL-2007) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000010945; Danio_rerio. DR Ensembl-Gn; ENSDARG00000016404; Danio_rerio. DR Ensembl-Gn; ENSDARG00000027649; Danio_rerio. DR Ensembl-Gn; ENSDARG00000031795; Danio_rerio. DR Ensembl-Gn; ENSDARG00000063465; Danio_rerio. DR Ensembl-Gn; ENSDARG00000071429; Danio_rerio. DR Ensembl-Gn; ENSDARG00000075964; Danio_rerio. DR Ensembl-Tr; ENSDART00000007640; Danio_rerio. DR Ensembl-Tr; ENSDART00000040292; Danio_rerio. DR Ensembl-Tr; ENSDART00000048977; Danio_rerio. DR Ensembl-Tr; ENSDART00000063714; Danio_rerio. DR Ensembl-Tr; ENSDART00000092784; Danio_rerio. DR Ensembl-Tr; ENSDART00000105590; Danio_rerio. DR Ensembl-Tr; ENSDART00000108473; Danio_rerio. DR Ensembl-Tr; ENSDART00000112123; Danio_rerio. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Will Talbot CC cDNA Library Preparation: Dr. Yutaka Suzuki and Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 312 Row: g Column: 1 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..1559 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_16" FT /clone="MGC:171685 IMAGE:7900646" FT /tissue_type="Gut, (includes stomach, intestine, liver and FT pancreas), pool of 13 normal adults, wild type AB" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1559 FT /gene="tdo2" FT /note="synonyms: fb62b10, wu:fb62b10" FT CDS 33..1253 FT /codon_start=1 FT /gene="tdo2" FT /product="tdo2 protein" FT /db_xref="GOA:A7MBU6" FT /db_xref="InterPro:IPR004981" FT /db_xref="UniProtKB/Swiss-Prot:A7MBU6" FT /db_xref="ZFIN:ZDB-GENE-030131-1187" FT /protein_id="AAI50377.1" FT /translation="MSGCPYFQRKFLSTSKQHLKEEENDEAQTGINKASKGGLIYGDYL FT QLDKIVTSQVLQSELKGNKIHDEHLFIVTHQAYELWFKQVLWELDSVREIFISGHVRDE FT RNMLKVNTRIHRIVMIFRLLLDQFAVLETMTALDFYDFRGYLSPASGFQSLQFRLLENK FT IGVPHNQRVPYNRRHYRDNFRDQESELLLHSEQEPTLLQLVEQWLERTPGLEEDGFNFW FT GKLEKNIFEGLRREKEHIEQKPASERKEEMLAELIKQRDIFLSLFDEKRHDHLVSTGQR FT RLSYKALQGALMIYFYREEPRFQVPFQLLTSLMDIDTLMTKWRYNHVCMVHRMIGRKDG FT TGGSSGYQYLRSTVSDRYKVFVDLFNLATFLIPRDWVPKLDPSEHTFLYMAECCDSSYC FT SSSDDSD" XX SQ Sequence 1559 BP; 483 A; 304 C; 391 G; 381 T; 0 other; aatcttgatg gtcatttatt cacatttcag ccatgagcgg atgtccgtat tttcagagga 60 aattcttgtc aactagtaag cagcatctga aagaagagga gaatgatgaa gctcagactg 120 gaattaacaa agccagcaaa ggaggtctga tctatggaga ctatctgcag ctggataaaa 180 tagtgacatc tcaggtgctt caaagtgagc tgaagggaaa caagatccat gacgaacatc 240 tgttcatcgt cacacatcaa gcatatgaac tgtggtttaa gcaggttttg tgggagctgg 300 actcagtcag agaaatcttc attagcggac atgtacgaga cgagcgaaac atgcttaaag 360 tcaacactcg catacacagg attgtgatga tatttcgact gttgcttgac cagttcgccg 420 ttctggaaac catgacggcc ttagacttct atgacttcag ggggtatctc tcaccagctt 480 caggcttcca gagtttgcag tttcgactgc tggagaacaa gattggggtc ccgcacaacc 540 agagggtgcc gtacaacaga aggcattaca gggacaattt ccgagaccag gagagtgagc 600 tgctcctcca ctcagagcag gagcccacgc tgcttcagtt agttgagcaa tggctagaga 660 gaacgccagg cttggaggaa gacggcttca atttttgggg gaagctggaa aaaaatatct 720 ttgaggggct caggagagag aaagaacata ttgagcaaaa accagcctcg gagaggaagg 780 aggagatgct ggccgagctc attaagcaga gggacatttt cttatcgctc tttgatgaaa 840 aaaggcatga tcacctagta agcacaggtc agaggaggct gtcttataaa gcactgcagg 900 gagctctgat gatctacttc tacagggagg agcctagatt tcaggttcct ttccagctgc 960 tgacatctct gatggacatc gataccctca tgaccaaatg gagatacaac catgtgtgta 1020 tggtgcaccg gatgattggc agaaaagacg gcacaggtgg ctcatcgggc tatcagtacc 1080 tgcgctccac tgtcagtgat cgctacaagg tgtttgtgga tctgtttaac ctggccacgt 1140 tcttgattcc gcgagactgg gtgcccaaac tggacccaag tgaacacacc ttcctgtaca 1200 tggctgaatg ttgcgacagc tcctactgca gcagcagtga tgattctgac taaacagatg 1260 gaggaatgag gagaagatgg acagtgtttg cagacagagt acaaaagaat acaaaaacag 1320 cttcaaaact cacaagtcta cccatatttt tttaagatgg tagaatgaga gggagtgaag 1380 cggtgctgat tatacagatg ttgtatacaa atgtctatat cagtcagact gttgatgcac 1440 ttgtgtatat actgtcaata taatgtaata ttctgaaatt tactgtgtgt atgaactgaa 1500 taataactgt aaattgtaaa taaagagtat acatatatac aaaaaaaaaa aaaaaaaaa 1559 // |
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