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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC148121; SV 1; linear; mRNA; STD; MAM; 2065 BP.
XX
AC   BC148121;
XX
DT   12-JUL-2007 (Rel. 92, Created)
DT   12-JUN-2008 (Rel. 96, Last updated, Version 3)
XX
DE   Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide
DE   N-acetylgalactosaminyltransferase 12 (GalNAc-T12), mRNA (cDNA clone
DE   MGC:148786 IMAGE:8304117), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-2065
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (26-JUN-2007) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000009037; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000011895; Bos_taurus.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: L. Savio, Y. Meng, L. Guan and S. Moore
CC   cDNA Library Preparation: L. Savio, Y. Meng, L. Guan and Dr. S.
CC   Moore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 292 Row: o Column: 1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2065
FT                   /organism="Bos taurus"
FT                   /lab_host="ElectroMAX DH10B T1 Phage Resistent cells"
FT                   /strain="Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-21"
FT                   /clone="MGC:148786 IMAGE:8304117"
FT                   /tissue_type="Fetal spinal column, 6 month old male fetus,
FT                   strain Hereford"
FT                   /note="Vector: pCMV-SPORT6.0"
FT                   /db_xref="taxon:9913"
FT   gene            1..2065
FT                   /gene="GALNT12"
FT   CDS             14..1753
FT                   /codon_start=1
FT                   /gene="GALNT12"
FT                   /product="GALNT12 protein"
FT                   /db_xref="GOA:A6QLX6"
FT                   /db_xref="InterPro:IPR001173"
FT                   /db_xref="UniProtKB/TrEMBL:A6QLX6"
FT                   /protein_id="AAI48122.1"
FT                   /translation="MLGRAARRRCPRGLRRGREALLALLALLALAGLASVLRARRGAGA
FT                   AEPGLRRTQRSGRRDPVLPRPPVPEDALGAHGEAVRLQLQGEELRLQEESVRLHQINIY
FT                   LSDRISLHRRLPERWNPLCKEKKYNYDELPTTSVVIAFYNEAWSTLLRTVYSVLETSPD
FT                   TLLEEVILVDDYSDREHLKERLATELAGLPKVRLIRANKREGLVRARLLGASVAKGDVL
FT                   TFLDCHCECHEGWLEPLLQRIHEKESAVVCPVIDVIDWNTFEYLGNAGEPQIGGFDWRL
FT                   VFTWHTVPEKERIRMRSPIDVIRSPTMAGGLFAVSKKYFEYLGSYDIGMEVWGGENLEF
FT                   SFRIWQCGGTLEIHPCSHVGHVFPRQAPYSRNKALANSVRAAEVWMDEFKELYYHRNPQ
FT                   ARLEPFGDVTERRQLRARLGCKDFKWFLNTVYPELHVPEDRPGFFGMLQNKGLRDYCFD
FT                   YNPPNEHEITGHQVILYRCHGMGQNQFFEYTSQNEIRYNTHQPEGCVAVVEGTDVLIMH
FT                   LCENTTPEDQKFILQEDGSLFHVPSKKCVQAERKDLSDSFVPLLRDCTNLDHQKWFFRE
FT                   HIV"
XX
SQ   Sequence 2065 BP; 488 A; 523 C; 609 G; 445 T; 0 other;
     agctggcggg cgcatgttgg ggcgtgcggc gcggagacgc tgcccgcgag ggctgcggcg        60
     cggccgggag gcgctgctgg cactgttggc gttgctagca ctggccgggc tggcctcggt       120
     gctgcgggcg cggcgcgggg ccggggcggc cgagcctgga ctccgacgca cccagcgctc       180
     cgggcggcgc gacccggtgc tgccgcggcc gccggtgccc gaggacgctc tgggcgccca       240
     cggcgaggca gtgcggctgc agttgcaggg cgaggagctg cggctgcagg aggagagcgt       300
     gcggctacac cagatcaaca tctacctcag cgaccgcatc tcgctgcacc gccgcctgcc       360
     cgagcgctgg aaccctctgt gcaaagagaa gaaatataat tacgatgaat tgcccacaac       420
     atctgtcgtc atagcgtttt ataatgaagc ctggtcaact ctccttcgga cggtttacag       480
     tgtcctcgag acatccccag acaccctgct agaagaagtt atccttgtag atgactacag       540
     tgatcgagaa cacctgaagg agcgcctggc caccgagctg gcggggttgc ccaaggtccg       600
     cctgatccga gccaacaaga gggagggcct ggtgcgagca cggctgctag gggcctccgt       660
     ggccaagggc gacgtgctga cctttctgga ctgccactgc gagtgccatg aggggtggct       720
     ggagccactg ctgcagagga tccatgaaaa ggagtcagcg gtggtgtgcc ctgtgattga       780
     tgtcattgac tggaacacct tcgagtacct ggggaatgct ggggagcccc agatcggcgg       840
     ttttgactgg cggctggtgt tcacgtggca cacggttccc gaaaaggaga ggatccgcat       900
     gcggtccccc atcgatgtca tcagatctcc aacgatggct ggtgggctgt ttgctgtgag       960
     taagaaatac tttgaatacc tggggtctta tgatatagga atggaagttt ggggtggaga      1020
     aaacctcgaa ttctcctttc ggatctggca gtgcgggggg accctggaga tacacccgtg      1080
     ttcgcacgtt ggccacgttt tccccaggca agctccctac tcccgcaata aggccctggc      1140
     caacagtgtc cgcgcagctg aagtgtggat ggatgaattt aaagagctct actaccatcg      1200
     caatccccag gcccgcctgg agccttttgg ggatgtgaca gagaggagac agctccgtgc      1260
     aaggcttggg tgtaaggact tcaagtggtt cttgaatacc gtgtatccag agctgcacgt      1320
     gcccgaggac aggcctggct tctttgggat gctccagaac aaaggactga gagattactg      1380
     ctttgactac aatcctccca atgagcacga gatcacagga caccaggtca ttctgtaccg      1440
     ctgtcacggg atgggtcaga accagttttt cgaatacaca tcccagaatg aaatacgcta      1500
     caacacccac cagccagaag gctgcgtggc agtggtggaa ggaacagacg tcctcatcat      1560
     gcatctgtgt gagaacacca ccccagagga ccagaagttc atccttcagg aggatggttc      1620
     tctatttcat gtaccgtcca agaaatgtgt tcaggctgag aggaaggact tgagtgacag      1680
     tttcgtacca ctcttacgag actgtaccaa cttggatcat cagaaatggt tcttcaggga      1740
     acacattgtg tgaagtgtca ccgtacgacg gagcccgtca gtggatgggg gaagccctgg      1800
     actgtattta acagacactt agctaagcac agagacagac ccaccaaaca cttggctgct      1860
     cttcttttta taaggaaatc attttgtgat ttgtgaaagg aatgttgtct ttagtaaaaa      1920
     tgtgaataac aattcgtatt gattttgaaa acaaaattgt tcccaaatac cctgttttca      1980
     aagggtagtc acaaaatgtt aactcttggt atttaaagaa ttaaaaactt taactatttt      2040
     tctatcagga aaaaaaaaaa aaaaa                                            2065
//
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