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EBI DbfetchID BC136633; SV 1; linear; mRNA; STD; HUM; 4021 BP. XX AC BC136633; XX DT 13-MAY-2008 (Rel. 95, Created) DT 13-MAY-2008 (Rel. 95, Last updated, Version 1) XX DE Homo sapiens transient receptor potential cation channel, subfamily V, DE member 1, mRNA (cDNA clone MGC:168246 IMAGE:9020623), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4021 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-4021 RG NIH MGC Project RA ; RT ; RL Submitted (29-MAR-2007) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSG00000196689; Homo_sapiens. DR Ensembl-Tr; ENST00000174621; Homo_sapiens. DR Ensembl-Tr; ENST00000310522; Homo_sapiens. DR Ensembl-Tr; ENST00000344161; Homo_sapiens. DR Ensembl-Tr; ENST00000399752; Homo_sapiens. DR Ensembl-Tr; ENST00000399756; Homo_sapiens. DR Ensembl-Tr; ENST00000399759; Homo_sapiens. DR Ensembl-Tr; ENST00000425167; Homo_sapiens. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Mike Brownstein, NIMH CC cDNA Library Preparation: British Columbia Cancer Research Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: LLDM Plate: 671 Row: a Column: 5. XX FH Key Location/Qualifiers FH FT source 1..4021 FT /organism="Homo sapiens" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_313" FT /clone="MGC:168246 IMAGE:9020623" FT /tissue_type="Brain, cerebellum, PCR rescued clones" FT /note="Vector: pCR-XL-TOPO with reversed insert; Clone FT identification sequence tag: CACATGCA" FT /db_xref="taxon:9606" FT gene 1..4021 FT /gene="TRPV1" FT /note="synonym: DKFZp434K0220" FT CDS 480..2999 FT /codon_start=1 FT /gene="TRPV1" FT /product="transient receptor potential cation channel, FT subfamily V, member 1" FT /db_xref="GOA:A2RUA9" FT /db_xref="HGNC:12716" FT /db_xref="InterPro:IPR002110" FT /db_xref="InterPro:IPR004729" FT /db_xref="InterPro:IPR005821" FT /db_xref="InterPro:IPR008347" FT /db_xref="InterPro:IPR020683" FT /db_xref="UniProtKB/TrEMBL:A2RUA9" FT /protein_id="AAI36634.1" FT /translation="MKKWSSTDLGAAADPLQKDTCPDPLDGDPNSRPPPAKPQLSTAKS FT RTRLFGKGDSEEAFPVDCPHEEGELDSCPTITVSPVITIQRPGDGPTGARLLSQDSVAA FT STEKTLRLYDRRSIFEAVAQNNCQDLESLLLFLQKSKKHLTDNEFKDPETGKTCLLKAM FT LNLHDGQNTTIPLLLEIARQTDSLKELVNASYTDSYYKGQTALHIAIERRNMALVTLLV FT ENGADVQAAAHGDFFKKTKGRPGFYFGELPLSLAACTNQLGIVKFLLQNSWQTADISAR FT DSVGNTVLHALVEVADNTADNTKFVTSMYNEILILGAKLHPTLKLEELTNKKGMTPLAL FT AAGTGKIGVLAYILQREIQEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEV FT IAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFLVYCLYMIIFTMAAYYRPV FT DGLPPFKMEKTGDYFRVTGEILSVLGGVYFFFRGIQYFLQRRPSMKTLFVDSYSEMLFF FT LQSLFMLATVVLYFSHLKEYVASMVFSLALGWTNMLYYTRGFQQMGIYAVMIEKMILRD FT LCRFMFVYIVFLFGFSTAVVTLIEDGKNDSLPSESTSHRWRGPACRPPDSSYNSLYSTC FT LELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQES FT KNIWKLQRAITILDTEKSFLKCMRKAFRSGKLLQVGYTPDGKDDYRWCFRVDEVNWTTW FT NTNVGIINEDPGNCEGVKRTLSFSLRSSRVSGRHWKNFALVPLLREASARDRQSAQPEE FT VYLRQFSGSLKPEDAEVFKSPAASGEK" XX SQ Sequence 4021 BP; 859 A; 1145 C; 1120 G; 897 T; 0 other; ctgagccatc ctcatcaccg agatcctccc tgaattcagc ccacgacagc caccccggcc 60 gttttccttg ttctgtgtgg ggagggaggc agcgcggtgg ttatcaacct caccctgcag 120 aggaggcacc tgaggcccag agacgaggag ggatgggtct aacccagaac cacagatggc 180 tctgagccgg gggcctgtcc accctcccag gccgacgtca gtggccgcag gactgcctgg 240 gccctgctag gcctgctcac ctctgaggcc tctggggtga gaggttcagt cctggaaaca 300 cttcagttct agggggctgg gggcagcagc aagttggagt tttggggtac cctgcttcac 360 agggcccttg gcaaggaggg caggtggggt ctaaggacaa gcagtcctta ctttgggagt 420 caaccccggc gtggtggctg ctgcaggttg cacactgggc cacagaggat ccagcaagga 480 tgaagaaatg gagcagcaca gacttggggg cagctgcgga cccactccaa aaggacacct 540 gcccagaccc cctggatgga gaccctaact ccaggccacc tccagccaag ccccagctct 600 ccacggccaa gagccgcacc cggctctttg ggaagggtga ctcggaggag gctttcccgg 660 tggattgccc tcacgaggaa ggtgagctgg actcctgccc gaccatcaca gtcagccctg 720 ttatcaccat ccagaggcca ggagacggcc ccaccggtgc caggctgctg tcccaggact 780 ctgtcgccgc cagcaccgag aagaccctca ggctctatga tcgcaggagt atctttgaag 840 ccgttgctca gaataactgc caggatctgg agagcctgct gctcttcctg cagaagagca 900 agaagcacct cacagacaac gagttcaaag accctgagac agggaagacc tgtctgctga 960 aagccatgct caacctgcac gacggacaga acaccaccat ccccctgctc ctggagatcg 1020 cgcggcaaac ggacagcctg aaggagcttg tcaacgccag ctacacggac agctactaca 1080 agggccagac agcactgcac atcgccatcg agagacgcaa catggccctg gtgaccctcc 1140 tggtggagaa cggagcagac gtccaggctg cggcccatgg ggacttcttt aagaaaacca 1200 aagggcggcc tggattctac ttcggtgaac tgcccctgtc cctggccgcg tgcaccaacc 1260 agctgggcat cgtgaagttc ctgctgcaga actcctggca gacggccgac atcagcgcca 1320 gggactcggt gggcaacacg gtgctgcacg ccctggtgga ggtggccgac aacacggccg 1380 acaacacgaa gtttgtgacg agcatgtaca atgagattct gatcctgggg gccaaactgc 1440 acccgacgct gaagctggag gagctcacca acaagaaggg aatgacgccg ctggctctgg 1500 cagctgggac cgggaagatc ggggtcttgg cctatattct ccagcgggag atccaggagc 1560 ccgagtgcag gcacctgtcc aggaagttca ccgagtgggc ctacgggccc gtgcactcct 1620 cgctgtacga cctgtcctgc atcgacacct gcgagaagaa ctcggtgctg gaggtgatcg 1680 cctacagcag cagcgagacc cctaatcgcc acgacatgct cttggtggag ccgctgaacc 1740 gactcctgca ggacaagtgg gacagattcg tcaagcgcat cttctacttc aacttcctgg 1800 tctactgcct gtacatgatc atcttcacca tggctgccta ctacaggccc gtggatggct 1860 tgcctccctt taagatggaa aaaactggag actatttccg agttactgga gagatcctgt 1920 ctgtgttagg aggagtctac ttctttttcc gagggattca gtatttcctg cagaggcggc 1980 cgtcgatgaa gaccctgttt gtggacagct acagtgagat gcttttcttt ctgcagtcac 2040 tgttcatgct ggccaccgtg gtgctgtact tcagccacct caaggagtat gtggcttcca 2100 tggtattctc cctggccttg ggctggacca acatgctcta ctacacccgc ggtttccagc 2160 agatgggcat ctatgccgtc atgatagaga agatgatcct gagagacctg tgccgtttca 2220 tgtttgtcta catcgtcttc ttgttcgggt tttccacagc ggtggtgacg ctgattgaag 2280 acgggaagaa tgactccctg ccgtctgagt ccacgtcgca caggtggcgg gggcctgcct 2340 gcaggccccc cgatagctcc tacaacagcc tgtactccac ctgcctggag ctgttcaagt 2400 tcaccatcgg catgggcgac ctggagttca ctgagaacta tgacttcaag gctgtcttca 2460 tcatcctgct gctggcctat gtaattctca cctacatcct cctgctcaac atgctcatcg 2520 ccctcatggg tgagactgtc aacaagatcg cacaggagag caagaacatc tggaagctgc 2580 agagagccat caccatcctg gacacggaga agagcttcct taagtgcatg aggaaggcct 2640 tccgctcagg caagctgctg caggtggggt acacacctga tggcaaggac gactaccggt 2700 ggtgcttcag ggtggacgag gtgaactgga ccacctggaa caccaacgtg ggcatcatca 2760 acgaagaccc gggcaactgt gagggcgtca agcgcaccct gagcttctcc ctgcggtcaa 2820 gcagagtttc aggcagacac tggaagaact ttgccctggt ccccctttta agagaggcaa 2880 gtgctcgaga taggcagtct gctcagcccg aggaagttta tctgcgacag ttttcagggt 2940 ctctgaagcc agaggacgct gaggtcttca agagtcctgc cgcttccggg gagaagtgag 3000 gacgtcacgc agacagcact gtcaacactg ggccttagga gaccccgttg ccacgggggg 3060 ctgctgaggg aacaccagtg ctctgtcagc agcctggcct ggtctgtgcc tgcccagcat 3120 gttcccaaat ctgtgctgga caagctgtgg gaagcgttct tggaagcatg gggagtgatg 3180 tacatccaac cgtcactgtc cccaagtgaa tctcctaaca gactttcagg tttttactca 3240 ctttactaaa cagtgtggat ggtcagtctc tactgggaca tgttaggccc ttgttttctt 3300 tgattttatt cttttttttg agacagaatt tcactcttct cgcccaggct ggaatgcagt 3360 ggcacaattt tggctccctg caacctccgc ctcctggatt ccagcaattc tcctgcctcg 3420 gcttcccaag tagctgggat tacaggcacg tgccaccatg tctggctaat tttttgtatt 3480 tttttaatag atatggggtt tcgccatgtt ggccaggctg gtctcgaact cctgacctca 3540 ggtgatccgc ccacctcggc ctcccaaagt gctgggatta caggtgtgag cctccacacc 3600 tggctgtttt ctttgatttt attctttttt ttttttttct gtgagacaga gtttcactct 3660 tgttgcccag gctggagtgc agtggtgtga tcttggctca ctgcaacctc tgcctcccgg 3720 gttcaagcga ttcttctgct tcagtctccc aagtagcttg gattacaggt gagcactacc 3780 acgcccggct aatttttgta tttttaatag agacggggtt tcaccatgtt ggccaggctg 3840 gtctcgaact cttgacctca ggtgatctgc ccgccttggc ctcccaaagt gctgggatta 3900 caggtgtgag ccgctgcgct cggccttctt tgattttata ttattaggag caaaagtaaa 3960 tgaagcccag gaaaacacct ttgggaacaa actcttcctt tgatggaaaa tgcagaggcc 4020 c 4021 // |
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