 |
|
EBI DbfetchID BC135531; SV 1; linear; mRNA; STD; VRT; 1784 BP. XX AC BC135531; XX DT 24-MAR-2007 (Rel. 91, Created) DT 28-JUN-2007 (Rel. 92, Last updated, Version 2) XX DE Xenopus tropicalis asparagine-linked glycosylation 8 homolog (yeast, DE alpha-1,3-glucosyltransferase), mRNA (cDNA clone MGC:122060 IMAGE:7612918), DE complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-1784 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-1784 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-1784 RA Klein S., Gerhard D.S.; RT ; RL Submitted (20-MAR-2007) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998J2016463Q. DR ImaGenes; IRAKp961O18248Q. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Richard M. Harland Laboratory, University of CC California, Berkeley CC cDNA Library Preparation: Richard M. Harland Laboratory CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 248 Row: o Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 58476869. XX FH Key Location/Qualifiers FH FT source 1..1784 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="E. coli XL1-Blue derivative, Stratagene FT ElectroTen-Blue" FT /mol_type="mRNA" FT /clone_lib="NIH_XGC_tropTad5" FT /clone="MGC:122060 IMAGE:7612918" FT /tissue_type="Whole embryo, Tadpole (st. 36-41)" FT /note="Vector: pCS108" FT /db_xref="taxon:8364" FT gene 1..1784 FT /gene="alg8" FT CDS 5..1633 FT /codon_start=1 FT /gene="alg8" FT /product="alg8 protein" FT /db_xref="GOA:A4IHH8" FT /db_xref="InterPro:IPR004856" FT /db_xref="UniProtKB/TrEMBL:A4IHH8" FT /protein_id="AAI35532.1" FT /translation="MAAPKGANVGSRNSSTGSKSKESGDGGWFVTLAIAVSLLKCLLLP FT TYHSTDFEVHRNWLAITHSLPVSKWYYEATSEWTLDYPPFFAWFEHLLAKVAQYVDPEM FT LKVENLNYASQETVLFQRLSVIITDILFIYAASQCCKCVNGRKDRRDLIQKPAFVLAVL FT LLWNFGLLIVDHIHFQYNGFLSGIMLLSIARLYQKRVMESAFLFAVLLNFKHIYLYIAP FT AYGMYMLRSYCFTGNNPDGSVRWRSFSCLRLLSLGLTVCSVFALSFGPFVYLGQLPQVL FT SRLFPFKRGLCHAYWAPNFWALYNMVDKALSIIGVKLQLLDPATIRTGTMTRGLVQEFE FT HSVLPSVTPMATLVCTLVSILPSVLRLWRKPQGPTGFLRCLILCALGSFMFGWHVHEKA FT ILLAILPLSILSVTSAKDAGIFLVLATTGHFSLFPLLFTAPELPIKVLLMLIFTVFSVS FT ALRAMFQRERALLSWVETLYLCGLVPLGAFCEVVYPLTSWHQQLPFVPLLLSSGYCALG FT VTYSWARLYISALSDLPSAKQKKNQ" XX SQ Sequence 1784 BP; 384 A; 485 C; 429 G; 486 T; 0 other; caagatggcg gctcccaaag gtgctaacgt gggctcccgc aatagcagca ccggctccaa 60 gagtaaagag agcggggatg ggggctggtt tgttaccctg gctatcgccg tgtccctgct 120 gaaatgcctt ctccttccga cctaccattc tacagatttt gaggtgcaca gaaactggtt 180 ggcaataacc cacagcctgc ctgtatctaa gtggtactat gaggcaacct cggagtggac 240 attggactac ccccctttct ttgcatggtt tgagcatctg ctcgccaaag tggcgcagta 300 cgttgatccg gagatgctga aggtggagaa tttaaactat gccagccagg agaccgtcct 360 cttccagagg ctttctgtta ttatcacaga tatcctcttc atctacgctg ccagccaatg 420 ctgtaagtgt gtgaatgggc ggaaggatcg cagggatctt atacagaagc cggcctttgt 480 cctggcggtg ctgctgctat ggaacttcgg cctgctgatt gtggatcata ttcacttcca 540 gtacaatggg ttcctctcgg gcatcatgct cctctccatt gcacgcttgt atcagaagag 600 agttatggaa agcgccttcc tttttgccgt ccttctcaat ttcaagcaca tctacctgta 660 cattgctccg gcctatggga tgtacatgct gcgttcctac tgtttcacag ggaataatcc 720 agacggatcc gtgcgctgga gaagtttcag ctgcctgcga ctcctctctc tcggcctgac 780 ggtctgctcg gtgtttgcac tttcctttgg gccctttgtc tacttgggcc aactccctca 840 ggtgctgtct cggcttttcc ctttcaaacg aggcctctgc catgcatact gggcacccaa 900 tttctgggca ctgtacaaca tggtggataa agctctgtcc attataggtg tgaagctgca 960 gctgctggac ccagccacta tccgtactgg gacaatgacg aggggattgg tgcaggagtt 1020 tgagcacagt gttcttccct cagttacacc aatggcaacg ctagtctgta ccctcgtctc 1080 catactgccc tctgtgctcc gactatggcg caagcctcaa ggacccactg gtttccttcg 1140 ctgcctaatc ctttgcgcac tgggatcctt catgttcggt tggcacgtgc atgagaaagc 1200 catcctcctg gcaatcctcc cactaagcat cttgtctgtg accagtgcaa aggatgctgg 1260 gatatttttg gtcctggcca cgacgggcca cttctcgctt ttccctctgc tcttcacagc 1320 gccagaactg cccattaagg tgctgctgat gttgatcttc actgtattta gtgtctcggc 1380 cctgagagcc atgtttcaaa gagagagggc gctgctgagc tgggtggaaa ccctatacct 1440 gtgcgggttg gtgcccctgg gggccttctg tgaagttgtg taccctctga cctcctggca 1500 ccaacagctc ccgtttgtgc ccctgctcct ctcctctggg tactgcgccc tgggggttac 1560 ctactcttgg gccagacttt acatttcagc gctttctgac ttgccatccg ccaagcaaaa 1620 gaagaaccaa taaaaagact tgaattctca gaaagccgag ccactcaggg tgggcacttt 1680 gtaccctttt atacacgcaa tattgttaca ttccatattt ttttttccga ataaaatatt 1740 tttgttgtaa aaccaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa 1784 // |
|