 |
|
EBI DbfetchID BC134524; SV 1; linear; mRNA; STD; MAM; 3074 BP. XX AC BC134524; XX DT 16-SEP-2007 (Rel. 93, Created) DT 05-OCT-2007 (Rel. 93, Last updated, Version 2) XX DE Bos taurus aldehyde dehydrogenase 4 family, member A1, mRNA (cDNA clone DE MGC:139177 IMAGE:8089784), complete cds. XX KW MGC. XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RC NIH-MGC Project RP 1-3074 RA Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y., RA Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C., RA Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J., RA Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J., RA Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A., RA Holt R., Jones S.J., Marra M.A.; RT ; RL Submitted (17-MAR-2007) to the EMBL/GenBank/DDBJ databases. RL BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100, RL 570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada XX DR Ensembl-Gn; ENSBTAG00000030335; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000020285; Bos_taurus. XX CC Contact: Robert Kirkpatrick CC Canada's Michael Smith Genome Sciences Centre CC BC Cancer Agency CC Suite 100, 570 West 7th Avenue, Vancouver, British Columbia, CC Canada, V5Z 4S6 CC Tel: 1-604-707-5900 x5406 CC Fax: 1-604-876-3561 CC Email: robertk@bcgsc.ca CC Tissue Procurement: Lee Alexander, USDA, ARS, NPA CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Bovine Genome Sequencing Program, Genome CC Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y, CC Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L, CC Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H, CC Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W, CC Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R, CC Jones S, Marra M CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 267 Row: b Column: 18. XX FH Key Location/Qualifiers FH FT source 1..3074 FT /organism="Bos taurus" FT /lab_host="DH10B" FT /strain="L1 Hereford" FT /mol_type="mRNA" FT /clone_lib="GC_BGC-17" FT /clone="MGC:139177 IMAGE:8089784" FT /tissue_type="Ascending colon, 6 month male fetus, L1 FT Hereford" FT /note="Vector: pExpress1" FT /db_xref="taxon:9913" FT gene 1..3074 FT /gene="ALDH4A1" FT CDS 6..1697 FT /codon_start=1 FT /gene="ALDH4A1" FT /product="ALDH4A1 protein" FT /db_xref="GOA:A7YWE4" FT /db_xref="InterPro:IPR005931" FT /db_xref="InterPro:IPR015590" FT /db_xref="InterPro:IPR016160" FT /db_xref="InterPro:IPR016161" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/Swiss-Prot:A7YWE4" FT /protein_id="AAI34525.1" FT /translation="MLLRSAALCRALLARRGRAAGLCRRCVSSLQVANEPVLAFTQGSP FT ERDALQKALKELKGRTEAIPCVVGDEEVWTSDVRYQASPFNHGHKVAKFCYADKALLHR FT AIGAALAARKEWDLKPVADRAQVFLKAADLLSGPRRAEVLAKTMVGQGKTVIQAEIDAA FT AELIDFFRFNAKFAMELEGEQPLSVPPSTNSMLYRGLEGFVAAISPFNFTAIGGNLAGA FT PALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCG FT INFTGSVPTFKHLWKQVAQNLDRFRTFPRLAGECGGKNFHFVHRSADVDSVVSGTLRSA FT FEYGGQKCSACSRLYAPRSLWPQIKGRLLEELGGIKVGNPAEDFGTFFSAVIDAKSFGR FT IRKWLEHARSSPSLTILAGGHCDDSVGYFVEPCIVETKDPQDPIMKEEIFGPVLAVYVY FT PDEEYKETLRLVDSTTSYGLTGAVFAQDKDVLREATELLRHAAGNFYINDKSTGSVVGQ FT QPFGGARASGTNDKPGGPHYVLRWTSPQVIKETHGPLGDWRYPYMQ" XX SQ Sequence 3074 BP; 503 A; 988 C; 1003 G; 580 T; 0 other; ccgggatgct gctgcgttcg gccgcgctct gccgcgccct actggcccgc cgggggaggg 60 cggccgggct gtgtcggagg tgcgtctcct ccctccaggt ggccaacgag cccgtgctgg 120 cattcacgca gggcagtcct gagcgagatg cgctgcagaa ggccctgaag gagctgaagg 180 gccggacgga ggccatccca tgcgtggtgg gggacgagga ggtctggacc tcggatgtgc 240 ggtaccaggc gtcgcccttc aaccatggac acaaggtggc caagttttgc tacgcagaca 300 aggccctgct ccacagagcc atcggggccg ccttggctgc caggaaggag tgggacctga 360 agcctgtggc ggaccgggcg caggtcttcc tgaaggcagc tgacctgctg agcgggccac 420 gcagggccga ggtcctggcc aagaccatgg tggggcaggg gaagacagtg atccaggcgg 480 agatcgacgc tgcggctgaa ctcatcgact tcttccgctt caatgccaag ttcgccatgg 540 agctggaagg cgagcagccc ctcagcgtgc cgcccagcac caacagcatg ctgtaccggg 600 ggctggaggg cttcgtggcg gccatctccc ccttcaactt cactgcgatc gggggcaacc 660 tggcaggggc tccggccttg atgggcaacg tggtcctgtg gaagcccagc gacactgcca 720 tgctggccag ctatgccgtc taccgcatcc tcagggaggc cgggctgccc cccaacatca 780 tccagtttgt gccagccgac gggcccacct tcggggacac tgtcaccagc tcagagcacc 840 tgtgtggcat caacttcaca ggcagtgtgc ccaccttcaa acacctgtgg aagcaggtgg 900 cccagaacct ggaccggttc cgaaccttcc cccgcctggc tggagagtgc gggggcaaga 960 acttccactt tgtgcaccgc tcggccgacg tggacagcgt ggtgagtggg accctgcgct 1020 cggcctttga gtacggcggc cagaagtgct cagcgtgctc ccgcctctac gcgccccgct 1080 cgctgtggcc gcagatcaaa gggcggctgc tggaggagct cggtgggatc aaagtgggca 1140 atcctgcaga ggattttggg accttcttct ctgccgtgat tgatgccaag tccttcggtc 1200 gcatccggaa gtggctggag cacgcccgct cctcgcccag cctcaccatc ctggccgggg 1260 gccactgtga cgactctgtg ggctactttg tggagccgtg catcgtcgag accaaggacc 1320 cccaggaccc catcatgaag gaggagatct tcggtcccgt gctggccgtg tacgtctacc 1380 cggacgagga atacaaggag acgctgcggc tggtcgacag caccaccagc tacggcctca 1440 cgggggcagt gttcgcccag gataaggacg ttctccggga ggccacagag ctgctgaggc 1500 acgccgcggg caacttctac atcaacgaca agtccaccgg ctcggtggtg ggccagcagc 1560 cctttggggg cgctcgagcc tcgggaacca atgacaagcc aggcggcccc cactatgtcc 1620 tgcggtggac gtcgccccag gtcatcaagg agacgcacgg gcctctgggg gactggcgct 1680 acccgtacat gcagtgagcc cgctcggcgc ctccgccgtc cgtccgtccg tccgtccaga 1740 cgactgacct cagtgcactg accacgcccc gtgcttccac cctgccccca tggggcgact 1800 ttctaggccc aagtcctgcc ccctgccccg catcggcctg cgtcctggcc cgtaccaccc 1860 cttagagtca gctgtgggct ctgggttgag atcacgctgt ggggaggtgt agggctgcca 1920 cccctgcccc caaagagtat cctagaaatt ccgcctggtg agtgtgacct tggcgcctaa 1980 ctggttctcc atcagtcccc ttctcgctcc tctctgctgt gtccagggtc tcagggacct 2040 ggggcgtggc agtggagaag cgcgtggatc tgcaggagga ggaggcagct ctgggcgccc 2100 tggcacgccg cacccaccga ggcccctggc ttctccgggt ctccagggtt aggggtgacc 2160 agggtggcct gcaggctgcc acgttgtggt cacaggtcgt gggggcacca gctggccttg 2220 ccctgtttgg ttcgtgctgc tcactagctc tttgcccaga cgcacctgtg ccagcaggta 2280 cccgcctgtg ccagcaggta cccgcgccca accaaacgcc ttagaccgag tgtgccttgc 2340 tcccgagtgc ctgagctctc ggaggccctc agattgctgg cagtctccag gcgatggggc 2400 tggggggctt ctgcagtcca cctgccaagg tgccagtcct tcctgttggg cctgtgaggt 2460 tggcagacct tgggggccct tcctgccact tccttagctc ttgggttctg ccccgagagc 2520 ctcctgtggc ctggggcttc ctgcaggagc tcagtgccca ctggcccagg tagatgttgc 2580 ccctaccttc cccagtgccc caagacctca cctcgggtcc ccatctggcc tggctgaggc 2640 tcacctgtag aatcgttcct ccttggcatg ttcgtggctc tgtgtgtgga ctggcccctc 2700 ggaggcctgt tcctcgatgc agctgatcgg gggacactca gatgcatcct gggtgggttc 2760 tgggtggtca ggtaagaggc gactctgagg agagttttta gggggccctc caggcacctc 2820 cgagggctgg cgtggggccc ccgtggggct ggagtggctg ttcccccagt gcacggtcac 2880 accgtggccc gcagtctggg ctgggcctgg tgccaacagg cttgtttctc acgggggcca 2940 ggatgggcgg cgggcaggcc ggaggtggtc ctggttctgc tagttctgca ctgtgaggcg 3000 gccgtgggat ttgccctgat gccacctaat aaaatgcctc ttccttaaaa aaaaaaaaaa 3060 aaaaaaaaaa aaaa 3074 // |
|