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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC133499; SV 1; linear; mRNA; STD; MAM; 1776 BP.
XX
AC   BC133499;
XX
DT   21-FEB-2007 (Rel. 90, Created)
DT   27-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Bos taurus CLP1, cleavage and polyadenylation factor I subunit, homolog (S.
DE   cerevisiae), mRNA (cDNA clone MGC:142985 IMAGE:8316775), complete cds.
XX
KW   MGC.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RC   NIH-MGC Project
RP   1-1776
RA   Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA   Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA   Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA   Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA   Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA   Holt R., Jones S.J., Marra M.A.;
RT   ;
RL   Submitted (19-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100,
RL   570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada
XX
DR   Ensembl-Gn; ENSBTAG00000006493; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000008507; Bos_taurus.
DR   ImaGenes; IMAGp998J0518036Q.
DR   ImaGenes; IRAKp961P14271Q.
XX
CC   Contact: Robert Kirkpatrick
CC   Canada's Michael Smith Genome Sciences Centre
CC   BC Cancer Agency
CC   Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
CC   Canada, V5Z 4S6
CC   Tel: 1-604-707-5900 x5406
CC   Fax: 1-604-876-3561
CC   Email: robertk@bcgsc.ca
CC   Tissue Procurement: Lee Alexander, USDA, ARS, NPA
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Bovine Genome Sequencing Program, Genome
CC   Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
CC   Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
CC   Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H,
CC   Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W,
CC   Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R,
CC   Jones S, Marra M
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 271 Row: p Column: 14.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1776
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /strain="L1 Hereford"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GC_BGC-27"
FT                   /clone="MGC:142985 IMAGE:8316775"
FT                   /tissue_type="Basal ganglia, female calf 8.5 months, L1
FT                   Hereford"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:9913"
FT   gene            1..1776
FT                   /gene="CLP1"
FT   CDS             82..1359
FT                   /codon_start=1
FT                   /gene="CLP1"
FT                   /product="CLP1, cleavage and polyadenylation factor I
FT                   subunit, homolog (S. cerevisiae)"
FT                   /db_xref="GOA:A2VE01"
FT                   /db_xref="InterPro:IPR010655"
FT                   /db_xref="UniProtKB/Swiss-Prot:A2VE01"
FT                   /protein_id="AAI33500.1"
FT                   /translation="MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIF
FT                   GTELTRNKKFTFDAGAKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMR
FT                   RQAEKEEERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTM
FT                   GALYIERPADVEEGFSIQAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRAS
FT                   VSGCVINTCGWVKGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPK
FT                   SGGVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLP
FT                   LGMSQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVF
FT                   TVLSPAPRPLPKNFLLIMDIRFMDLK"
XX
SQ   Sequence 1776 BP; 403 A; 473 C; 500 G; 400 T; 0 other;
     gtcttcttgg tttcgaggtt tgagctcgtg gctgtacaga tctgattttg gcgttccaga        60
     caaagcagcc acacaggaaa gatgggagag gaggccaatg atgacaagaa gccaacaact       120
     aaatttgaac tggagcggga gacagagctt cgctttgagg tggaggcgtc gcagtcagtt       180
     cagttggagc tgctggctgg catggcagaa atcttcggca cagagctgac ccgaaacaag       240
     aagttcacct ttgatgccgg cgccaaggtg gctgtcttca cttggcacgg ctgttcgctg       300
     cagctcagtg gccgcaccga ggtggcttac gtctccaagg ataccccaat gttgctttat       360
     ctcaacacgc atacggcctt ggagcagatg cggaggcagg cagagaagga ggaggagcga       420
     ggcccccggg tgatggtcgt gggccccacg gacgtgggca agtccaccgt gtgccgtctg       480
     ctgctcaact acgcggtgcg tttgggccgc cggcccacgt acgtggagct ggatgtgggc       540
     cagggctctg tgtccatccc cggcaccatg ggggccctgt acattgagcg gccagcggac       600
     gttgaggagg ggttctccat ccaggccccg ctggtgtacc acttcggctc caccacgcct       660
     ggcaccaaca tcaagcttta taataagatt acatctcgtt tagccgatgt gttcaaccag       720
     aggtgtgaag tgaaccgcag ggcctcggtg agcggctgtg tcattaacac ctgtggctgg       780
     gtcaagggct ctggttacca ggccctggtc catgcagcct cagcctttga ggtggatgtc       840
     gttgtggttc tggatcaaga acggctgtac aatgaactga aacgggacct gcctcacttc       900
     gtccgcacgg tgctgctccc caagtcgggg ggtgtggtgg agcgctccaa ggacttccgg       960
     cgggaatgcc gggatgagcg catccgtgag tatttctatg ggttccgggg ctgtttctat      1020
     ccccatgcct tcaacgtcaa attttcagat gtgaaaatct acaaagtcgg ggcacccacc      1080
     atcccagact cttgcctgcc tctgggcatg tctcaggaag acaatcagct caagctggtg      1140
     cctgttaccc ccggccgaga tatggtgcac cacctgctga gcgtcagcac ggcggagggc      1200
     acagaggaga acctctccga gaccagcgtg gcgggcttca tcgtggtgac cagtgtggac      1260
     ctggagcacc aggtgttcac cgttctctct ccggcccccc gcccactgcc caagaacttc      1320
     cttctcatca tggatatccg gttcatggat cttaagtagc gatccgcagg cagccttgct      1380
     gcctggggcc tggaggcctt ccggccatca ccaagggcat acgggctgag ggatgagcac      1440
     ctcttgcggc caggctgctg ggtaaatggt ggactaccag aaagcatacg ttctacctct      1500
     taaaaacagg tggtggtcac ctaactcttc cagttgtgaa ccaaaggttt cttaggtcac      1560
     cgaaggtgcc accagagaag ccccctttct ttcactgtgc taccacgtgg actcatttat      1620
     taccatttta tcttctgcat atactacttg ttatctcatt tgtccgcaaa gagtgaattc      1680
     aaaggactcc tcccaataaa gttcatactt ggaaaaaaag aaaaaactat tttaataaat      1740
     atttttgcca taaaaaaaaa aaaaaaaaaa aaaaaa                                1776
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