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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC130193; SV 1; linear; mRNA; STD; VRT; 1765 BP.
XX
AC   BC130193;
XX
DT   04-JAN-2007 (Rel. 90, Created)
DT   28-JUN-2007 (Rel. 92, Last updated, Version 2)
XX
DE   Xenopus laevis hypothetical protein LOC100037043, mRNA (cDNA clone
DE   MGC:160769 IMAGE:5085180), complete cds.
XX
KW   MGC.
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OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1765
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1765
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1765
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (22-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998P1311227Q.
DR   ImaGenes; IRAKp961D13300Q.
DR   ImaGenes; IRBHp990H0388D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 300 Row: d Column: 13
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi:
CC   120577611.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1765
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_OO1"
FT                   /clone="MGC:160769 IMAGE:5085180"
FT                   /tissue_type="Oocytes"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:8355"
FT   gene            1..1765
FT                   /gene="LOC100037043"
FT   CDS             4..1461
FT                   /codon_start=1
FT                   /gene="LOC100037043"
FT                   /product="LOC100037043 protein"
FT                   /db_xref="GOA:A1L3M2"
FT                   /db_xref="InterPro:IPR001296"
FT                   /db_xref="UniProtKB/TrEMBL:A1L3M2"
FT                   /protein_id="AAI30194.1"
FT                   /translation="MACVRKLILLAVVLSCGTAALCGASFLNYILFLCVLPALLLAWTD
FT                   NPKGNKRICVLVLGDIGRSPRMTYHALSLARHGFFVTLAGFRESEPHRELLHHERINIQ
FT                   PISEFRMFKVGPRMFQYFVKVIVQAFQLFYILLKIDPLSYIILQNPPGLPSIAVTWLFC
FT                   VLRRSQLIIDWHNYGYSIMSLTNGPKHPIVRIAKWYEYVFGRLSDYNFCVTNAMKDDLM
FT                   VNWNIKAATLYDKPASIFRETPIEMQHKLFMNLAKEYPPFRYQSQSKCSGTEKTAFTDL
FT                   TLENGAVNYNKERPALLISSTSWTEDEDFSVLLKALEEYELYIRNGAKLPSLVCVITGK
FT                   GPLKEHYSRLIKEMQFKNIQICTPWLEAEDYPLLLGSADLGVCLHKSSSGLDLPMKVVD
FT                   MFGCCLPVCAIKFKCLHELVKHEENGLIFEDALELAEQLKDMFTDFTSKSSKLNRFRHN
FT                   LSESVQIRWDESWDQIVLPLITENCKT"
XX
SQ   Sequence 1765 BP; 554 A; 313 C; 368 G; 530 T; 0 other;
     aaaatggcgt gtgttaggaa gctcatattg cttgcggtag ttttgtcctg tggcactgcg        60
     gctttatgcg gtgctagttt tttaaactac atactgttcc tctgtgtgct gcccgcgcta       120
     ttgcttgctt ggactgataa tccgaaaggt aacaagcgga tttgcgtgct tgttcttgga       180
     gacatcggcc gtagcccgcg gatgacgtat cacgcgctgt cattggctcg gcatgggttt       240
     tttgtgaccc ttgcaggctt ccgtgaatct gaaccccata gagagctctt acatcatgaa       300
     agaataaata ttcagccaat ttctgaattt agaatgttta aagttggccc acggatgttt       360
     cagtactttg ttaaggtgat tgttcaggct tttcagcttt tttacatatt actgaagatt       420
     gatccccttt catatatcat tcttcagaat cctccaggct tgcctagtat tgcagttacg       480
     tggttgtttt gtgttctaag aaggagccaa ctcataattg actggcataa ctatggctat       540
     tcaatcatga gcctgacaaa tggaccaaag catccaattg tgcgaattgc aaaatggtat       600
     gaatatgtgt ttgggcgtct gtctgattat aacttttgtg tgactaatgc aatgaaggat       660
     gacttaatgg ttaactggaa catcaaagct gctactctct atgataagcc tgcctccatt       720
     tttcgagaaa ctccgattga aatgcagcac aaattattca tgaatcttgc aaaggagtat       780
     ccaccattta gatatcagtc acaatctaaa tgctcaggca ctgaaaaaac tgctttcact       840
     gatttaaccc tggaaaatgg tgctgttaac tacaacaagg agcgccctgc attattaatc       900
     agtagtacaa gctggacaga ggatgaagac ttttcagtat tactgaaagc actggaagag       960
     tatgaattgt atattcgaaa tggagccaaa cttccatcac ttgtttgtgt tataacagga      1020
     aaggggcctt taaaggaaca ctacagtcgg ctaattaaag agatgcagtt taagaacatc      1080
     cagatttgca caccatggtt ggaggcagaa gattatccac ttttattggg atcggctgat      1140
     ctgggagtgt gtctccacaa gtcatccagt ggcctggacc ttccaatgaa agtggtggat      1200
     atgtttggtt gctgtcttcc tgtttgtgca attaaattta aatgtttaca tgaacttgta      1260
     aaacatgaag aaaatggttt aatatttgaa gatgcactag agcttgctga acaattaaag      1320
     gatatgttta cggattttac gagtaagtca agcaaactta atagatttcg acataatctc      1380
     agtgaatctg tacaaatacg ctgggatgaa tcctgggacc agattgttct accgctgatc      1440
     acagaaaact gtaaaactta gctgcggcat tgcatagaac tgttactctg cctccatgtt      1500
     ttggatgctg taagactgca tgcagaaaac tagaacccgc tgagatcaag tggaaatcgt      1560
     aggttctaca gtcaacacat tacactgtga aagatccgat gaatgtgttt cttcttgtta      1620
     ctggtcacgt gcataaatat actgtatatt ttttatttgg atggtagtaa tttaataaaa      1680
     ttattcttgg accaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1740
     aaaaaaaaaa aaaaaaaaaa aaaaa                                            1765
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