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EBI DbfetchID BC129351; SV 1; linear; mRNA; STD; VRT; 2270 BP. XX AC BC129351; XX DT 03-JAN-2007 (Rel. 90, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 4) XX DE Danio rerio zgc:158649, mRNA (cDNA clone MGC:158649 IMAGE:7228116), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2270 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2270 RG NIH MGC Project RA ; RT ; RL Submitted (22-DEC-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000010035; Danio_rerio. DR Ensembl-Gn; ENSDARG00000015918; Danio_rerio. DR Ensembl-Gn; ENSDARG00000029331; Danio_rerio. DR Ensembl-Gn; ENSDARG00000031968; Danio_rerio. DR Ensembl-Gn; ENSDARG00000033201; Danio_rerio. DR Ensembl-Gn; ENSDARG00000039434; Danio_rerio. DR Ensembl-Gn; ENSDARG00000041107; Danio_rerio. DR Ensembl-Gn; ENSDARG00000057255; Danio_rerio. DR Ensembl-Gn; ENSDARG00000063255; Danio_rerio. DR Ensembl-Gn; ENSDARG00000077317; Danio_rerio. DR Ensembl-Tr; ENSDART00000002568; Danio_rerio. DR Ensembl-Tr; ENSDART00000016502; Danio_rerio. DR Ensembl-Tr; ENSDART00000040557; Danio_rerio. DR Ensembl-Tr; ENSDART00000040707; Danio_rerio. DR Ensembl-Tr; ENSDART00000045609; Danio_rerio. DR Ensembl-Tr; ENSDART00000057611; Danio_rerio. DR Ensembl-Tr; ENSDART00000060243; Danio_rerio. DR Ensembl-Tr; ENSDART00000092250; Danio_rerio. DR Ensembl-Tr; ENSDART00000100729; Danio_rerio. DR Ensembl-Tr; ENSDART00000104118; Danio_rerio. DR Ensembl-Tr; ENSDART00000104268; Danio_rerio. DR Ensembl-Tr; ENSDART00000113386; Danio_rerio. DR Ensembl-Tr; ENSDART00000114248; Danio_rerio. DR ImaGenes; IMAGp998M1015144Q. DR ImaGenes; IRAKp961E09294Q. DR ImaGenes; IRBOp991G0990D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: John Ngai, Nancy Freeman, NIDCD CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 294 Row: e Column: 9 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2270 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_14" FT /clone="MGC:158649 IMAGE:7228116" FT /tissue_type="Olfactory epithelium" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2270 FT /gene="zgc:158649" FT CDS 84..2225 FT /codon_start=1 FT /gene="zgc:158649" FT /product="zgc:158649" FT /db_xref="GOA:A1L251" FT /db_xref="InterPro:IPR005201" FT /db_xref="UniProtKB/Swiss-Prot:A1L251" FT /db_xref="ZFIN:ZDB-GENE-070112-1332" FT /protein_id="AAI29352.1" FT /translation="MIARKRKSNGSETTSGKIPKDDVSSESCLDQPADESVHEVVTFEP FT STLPSVHYDPDTTEPISCSLKSLDELLSWKRNEASIFNVSSVPLASRYPPLESCPRRTL FT VSHDMMGGYLEDRFIQGAEVETPYAFYHWEYIDIFNYFSHQMVTIPPAVWTNAAHRHGV FT LSIGTFITEWTDGAKTCEAFLADEESYRAAADKLVQISHCNGFDGWLINIENELSETAV FT NNTGPFLRYLTDQMHERVPGSVVIWYDSVLKDGKLLWQNELNDNNRMFFDACDGFFTNY FT NWTEQSLEGMKSYAAAQGRFADIYVGVDVFARGKVIGGKYETNKALELIRKYDLSTAIF FT APDWVYECHEKADFRQNQDKFWSLLSDFLYIHRPSSNLPFVSSFCQGFGKSLYWRGKVE FT TERSWFNLHAQEIQPLYLSESFGNGGWLRTRGCSEDAWIGGSSLMLEGMIPSGLSDVCA FT RIFSLHVPLAARTFVSFVFKPPVGVKVSLELKTIDGPLCTFDGTEEIASRSVFPEALAE FT SNQLVEQFAQNCGQWASDGWATRCFLLKMIGCSLREVCIRVSRDGGDEDINFNCRIGEI FT MLLDADNLQAPLQSVEGICVNDVVWQTGVLKGDGHTLKVLLNATLRWQYPTRQVRHFRI FT HWRHLRGPDPRIPSGPLTLIGRSYSALYRVVELEVPAAPGLIELVVEPVSKEGFSVPEA FT QWGRQTLSYSQSPSGNPSH" XX SQ Sequence 2270 BP; 600 A; 494 C; 607 G; 569 T; 0 other; aaaaaaatag aaagtacctg taaactagct gtcctttgac ggtttgtaaa atggagagtg 60 tttctacaaa aggcaaagac aacatgatag ctcgaaaacg aaaaagcaac ggtagtgaaa 120 cgacaagcgg caagatacct aaggatgatg tcagctctga gtcctgccta gatcaaccag 180 ctgatgaaag tgttcatgaa gtcgtaacat tcgagccatc cacgctgcca tcagtccact 240 atgatcctga cacaacggag cccatcagct gcagtctgaa gtctctcgat gagctgctgt 300 catggaaaag aaatgaagca agtatattta atgtgtccag tgtgccactg gctagcaggt 360 atcctccact cgaaagctgc ccaaggagga cactggtgtc ccatgacatg atgggaggct 420 atctagagga caggttcatt caaggtgcag aggtagagac tccatatgcc ttctatcact 480 gggagtatat tgacatcttt aactacttca gtcatcaaat ggtaaccatt cctcctgcgg 540 tctggaccaa tgcagcacac aggcatggag tactctctat tggcacattt atcacagaat 600 ggacagatgg agcaaagaca tgtgaggcct tcctagctga tgaggagagt taccgcgcag 660 ctgctgataa gttggttcag atttcccact gcaatggctt tgacggctgg ctaataaaca 720 tagaaaatga gctgagtgag actgcggtga ataacactgg cccctttctg cgctacctca 780 ctgaccagat gcacgagcgt gtcccaggaa gtgtggtcat ctggtatgac agtgtactga 840 aagacggcaa gctcctctgg cagaacgagc tcaatgacaa taacagaatg tttttcgacg 900 cttgtgatgg atttttcaca aactacaact ggacagagca gagcctggag ggaatgaagt 960 cttatgccgc tgctcagggt cgctttgctg acatctatgt tggtgtagat gtgtttgcaa 1020 gaggcaaggt gatcggaggg aaatatgaga ccaataaggc tctggagctg attcggaagt 1080 atgacctgtc gacagccatc tttgctcctg attgggtgta tgaatgtcat gaaaaggcag 1140 attttcggca aaatcaagac aagttttgga gcttgctatc tgatttcctt tatatccacc 1200 gaccatcatc caatcttccg tttgtttcct cattttgtca aggatttggg aagagcctgt 1260 actggagggg aaaggttgag actgagagga gctggttcaa tctgcacgct caggagatcc 1320 agcctttgta tctctcagag agcttcggga atggcggctg gcttaggacc cgtggctgct 1380 cagaggatgc ctggattgga ggaagctctc tgatgctgga gggcatgatt ccatctggac 1440 tttctgatgt ctgtgcgagg atattttctc tccacgtacc tctggctgcc aggacgtttg 1500 tttctttcgt cttcaagcca cctgtggggg taaaggtgtc tttggagctc aaaacaatag 1560 atggtcctct gtgcacattt gacgggacag aggaaatagc atctagaagt gtctttcctg 1620 aagcactagc tgagagcaac cagttggtag agcagtttgc acagaattgt ggacagtggg 1680 cttcagatgg ctgggctacc agatgtttcc tgttgaaaat gattggatgc tcattgcgag 1740 aagtgtgcat tcgcgtttcc cgagatggag gagatgaaga catcaacttt aactgcagga 1800 ttggagagat tatgctgttg gatgcagata atcttcaagc gccactgcag tctgttgaag 1860 gcatctgtgt caatgatgtg gtgtggcaga cgggtgtttt aaaaggagac ggacacacac 1920 tgaaggtact tttgaacgcc accttgcgat ggcaatatcc aacccggcag gtccgccatt 1980 tccggattca ctggaggcac ctgcgtggtc ctgatcctcg gatcccttct ggacccttga 2040 ctctgatcgg taggtcttac tccgccctgt accgcgtggt ggagttggag gttcctgctg 2100 ctccgggtct catagagctg gtggtggagc ctgtgagtaa agaggggttc agcgtcccag 2160 aagcccagtg gggccgacag acccttagct acagccagag tccttcaggc aacccatctc 2220 attgatcatg caaagggagt tcaccaaaaa aaaaaaaaaa aaaaaaaaaa 2270 // |
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