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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC128979; SV 1; linear; mRNA; STD; VRT; 815 BP.
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AC   BC128979;
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DT   13-JAN-2007 (Rel. 90, Created)
DT   18-OCT-2008 (Rel. 97, Last updated, Version 10)
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DE   Xenopus laevis Probable phospholipase D family member FLJ33580 homolog,
DE   mRNA (cDNA clone MGC:160624 IMAGE:5074578), complete cds.
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KW   MGC.
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OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-815
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-815
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [3]
RC   NIH-MGC Project
RP   1-815
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (05-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
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DR   ImaGenes; IMAGp998F1911200Q.
DR   ImaGenes; IRAKp961D21300Q.
DR   ImaGenes; IRBHp990H0887D.
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CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Igor Dawid
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 300 Row: d Column: 21
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi:
CC   122063394.
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FH   Key             Location/Qualifiers
FH
FT   source          1..815
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Ov1"
FT                   /clone="MGC:160624 IMAGE:5074578"
FT                   /tissue_type="Ovary, Xenopus"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:8355"
FT   gene            1..815
FT                   /gene="LOC100037063"
FT   CDS             3..635
FT                   /codon_start=1
FT                   /gene="LOC100037063"
FT                   /product="LOC100037063 protein"
FT                   /db_xref="GOA:A1L1C2"
FT                   /db_xref="InterPro:IPR001736"
FT                   /db_xref="UniProtKB/Swiss-Prot:A1L1C2"
FT                   /protein_id="AAI28980.1"
FT                   /translation="MLLWGRWKLAAGLAGLALSLELFYRYMRRRKPLREVLFFPVPVTC
FT                   IEPVLSPMKQCSCPLPHTDSAFSRLLVQLLGAQRSLELCVFTFSSPSLARALLILHRRD
FT                   VRVRVITDNDYMAAPGSQIGPLRSAGVAVRHDQSSGYMHHKFAVVDGTVVLTGSLNWTV
FT                   QAFQSNKENILITDDTVIVKAYQKEFERLWEEYDPATYNFFPEKENK"
XX
SQ   Sequence 815 BP; 211 A; 207 C; 194 G; 203 T; 0 other;
     agatgttact gtgggggcgc tggaagttag ccgcgggcct ggcgggcctt gctctcagcc        60
     tagagctgtt ctatcggtac atgaggcgga gaaagcctct tcgggaggtg ctgtttttcc       120
     cggttccggt gacctgtatc gagcccgtgt tgtctcccat gaagcaatgc tcctgtccac       180
     tccctcacac cgacagcgcc ttcagccgtc tcctcgtgca gctcctcggg gcccagcgca       240
     gcctggaact ctgtgtattc accttctcca gtccctccct ggcccgggcc ttgcttattc       300
     tgcaccgcag ggacgtcagg gtccgagtca tcactgacaa cgactacatg gctgcccccg       360
     gctctcagat tgggcccctg cggagcgcag gtgttgcagt tcgacatgac cagtccagtg       420
     gctatatgca ccacaagttt gctgttgttg acgggacagt tgttctgacc ggctccctaa       480
     actggaccgt ccaagcattc cagtccaaca aggagaacat tctcattaca gatgacactg       540
     tgattgtaaa agcttatcag aaggagtttg agcgactctg ggaagagtat gatccagcaa       600
     catataattt cttccctgag aaagagaaca agtaacaaga ggaactaaac atctcttctt       660
     gcaagcacta aatatgggaa aaatactttg ctttttaata aaaaaaaatg taaactaacc       720
     atatgaacgt cagcagtttt actaaaggaa atttgtagct caaatcttgc tggacgttat       780
     taaaaaaagg gttttacttt aaaaaaaaaa aaaaa                                  815
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