 |
|
EBI DbfetchID BC127486; SV 1; linear; mRNA; STD; ROD; 2114 BP. XX AC BC127486; XX DT 06-NOV-2006 (Rel. 89, Created) DT 06-NOV-2006 (Rel. 89, Last updated, Version 1) XX DE Rattus norvegicus casein kinase 1, alpha 1, mRNA (cDNA clone MGC:156603 DE IMAGE:8364080), complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-2114 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2114 RG NIH MGC Project RA ; RT ; RL Submitted (03-NOV-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSRNOG00000017106; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000023301; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000044346; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000066133; Rattus_norvegicus. DR ImaGenes; IMAGp998I0618158Q. DR ImaGenes; IRAKp961M15290Q. DR ImaGenes; IRBPp993A1152D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Howard J. Jacob CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 290 Row: m Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 16758949. XX FH Key Location/Qualifiers FH FT source 1..2114 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_365" FT /clone="MGC:156603 IMAGE:8364080" FT /tissue_type="Brain, 15 day embryo pool, mixed sex, strain FT BN/NHsdMcwi" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..2114 FT /gene="Csnk1a1" FT CDS 227..1240 FT /codon_start=1 FT /gene="Csnk1a1" FT /product="Csnk1a1 protein" FT /db_xref="GOA:A0JPL2" FT /db_xref="InterPro:IPR000719" FT /db_xref="InterPro:IPR008271" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR017441" FT /db_xref="InterPro:IPR017442" FT /db_xref="UniProtKB/TrEMBL:A0JPL2" FT /protein_id="AAI27487.1" FT /translation="MASSSGSKAEFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAV FT KLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFC FT SRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKK FT YRDNRTRQHIPYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQ FT GLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF FT RILFRTLNHQYDYTFDWTMLKQKAAQQAASSSGQGQQAQTPTGKQTDKTKSNMKGF" XX SQ Sequence 2114 BP; 622 A; 435 C; 483 G; 574 T; 0 other; gcttcagcag ccgcgaccac ccttaactaa ctgcggccag gccctcagcg agcggcggcg 60 atccggcttc tctcagccgc ctttgcgccc tgaaacgcca acaaagcctt ggttttaggt 120 tgcctgccgc gctcctcaga tctgccgggt ggaacagccc cggaggcttc catcctcttc 180 cagaggtgtc ggggcttggc ccccgcctcc atcttcgcgt ctcaggatgg cgagcagcag 240 cggctccaag gccgaattta tcgtcggtgg gaaatacaaa ctggtgcgga agatcggatc 300 tggttccttc ggggacattt atctagcgat caacatcacc aatggcgagg aagtggcagt 360 gaaactagaa tcccagaagg ccaggcatcc ccagttgctg tacgagagca aactgtataa 420 gattcttcaa ggtggggttg gcatccctca catacggtgg tatgggcaag aaaaagacta 480 taatgtgcta gtcatggatc ttctgggacc cagcctcgaa gacctcttca atttctgttc 540 aagaaggttc actatgaaga ctgtacttat gttagctgac cagatgatca gtagaattga 600 atatgtgcat acaaagaatt ttatacacag agacattaaa ccagataact tcctaatggg 660 tattgggcgt cactgtaata agttattcct tattgatttt ggtttggcca aaaagtacag 720 agacaacagg acaaggcaac acataccata cagggaagat aaaaacctca ctggcactgc 780 ccggtatgcc agcatcaatg cacatcttgg cattgagcag agtcgccgag atgacatgga 840 atctttagga tatgttttga tgtattttaa tagaaccagt ctgccatggc aagggctaaa 900 ggctgcaaca aagaaacaaa aatatgaaaa gattagtgaa aagaagatgt ccactcctgt 960 tgaagttttg tgtaaggggt ttcctgcaga atttgccatg tacttaaatt actgtcgtgg 1020 gctgcgcttt gaggaagctc cggattacat gtatctgagg cagctgttcc gcatcctctt 1080 caggaccctg aaccaccagt atgactacac gtttgattgg acgatgttaa agcagaaagc 1140 agcccagcag gcagcctctt ccagtgggca gggtcagcag gcccaaaccc ccacaggcaa 1200 gcaaactgac aaaaccaaga gtaacatgaa aggtttctaa gcatggagga agagaagcag 1260 cagagcagaa gattggagca acatttgttt ctccccagat ctagaccttt tagttcatat 1320 gtacactagc cagtggttgt ggacaaccat ttacttggtg taaaggactt actttccgta 1380 taaactggct ctgggtagca ctgctgatcc tgagctgtag ccgctgtaat tgtgaatatt 1440 aactgaggta gtgaaacatg gtgtccggtt ttctattgca tttttttcaa gtggaaaagt 1500 taactaaatg gttgacacac aaattggtgg agaaattgtg catatgccaa tttttttgtt 1560 aaaatctttt attttgaact atactgcttt gagatctcat ttcagaagaa cggcatgaac 1620 agtcttcagc cacagttgtg atggttgtaa atgttcacaa ttgtgtgttc ttagggtttt 1680 ccatccctgg ggtttgcaag ttgttgacgt aaaaacattc tttaaatggc tggcttcttg 1740 tttgcaagct agctgatagg gtagcaacca aagattccag tgttcgagca tttgaaagac 1800 tctgcctgct tactgtgcta gaaataacag catctaaagt gaagacttac gaaaaaaaac 1860 atagcgacta ctagattatc tttaggactc tgcattaact ctataatgtt cttgctatta 1920 aaaaaagcat atttgtcaca gaaatttagt taccgtctta caactgaaca tgtatgtgtg 1980 ttgcttagat aaatgtaatc actgtaaaca tctatatgat ctgggatttt gtttttattt 2040 tgaaatggga gctttttgtt tacaagttca ttaaaaacta aaaactgaaa aaaaaaaaaa 2100 aaaaaaaaaa aaaa 2114 // |
|