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EBI DbfetchID BC127390; SV 1; linear; mRNA; STD; VRT; 3076 BP. XX AC BC127390; XX DT 06-NOV-2006 (Rel. 89, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 6) XX DE Danio rerio zgc:152983, mRNA (cDNA clone MGC:152983 IMAGE:5915718), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-3076 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3076 RG NIH MGC Project RA ; RT ; RL Submitted (03-NOV-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ImaGenes; IMAGp998N0713159Q. DR ImaGenes; IRAKp961I09283Q. DR ImaGenes; IRBOp991H0884D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 283 Row: i Column: 9 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: CC 117558179. XX FH Key Location/Qualifiers FH FT source 1..3076 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="Sugano SJD adult male" FT /clone="MGC:152983 IMAGE:5915718" FT /tissue_type="Whole body, adult male" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..3076 FT /gene="zgc:152983" FT /gene_synonym="im:7160691" FT CDS 474..2006 FT /codon_start=1 FT /gene="zgc:152983" FT /gene_synonym="im:7160691" FT /product="zgc:152983" FT /db_xref="GOA:A0JPE9" FT /db_xref="InterPro:IPR005999" FT /db_xref="UniProtKB/Swiss-Prot:A0JPE9" FT /db_xref="ZFIN:ZDB-GENE-061110-49" FT /protein_id="AAI27391.1" FT /translation="MGTTSIRCHVYDKSASIRGSCSAKVSLLYPQPGWVEIDPDELWDG FT FVTVVKGAVQDSGLQMCQMESLGISTQRATFMTWDRNTGKPFHKFITWQDMRAAELVRS FT WNGSCAMKTVHGVMKMLHFLSRQKRFLAASLVVFTTQHVSLRLVWALNNIPQLRQAVED FT GSCYFGTIDTWLLYKLTKGLVHATDYSNASATAIFDSYQMCWSGFLCSLLSIPLSILPK FT VQDTSHKFGLCDSSIFGVPIPIMCVMADQQTAMFGECCFDTGDVKITMGTGTFMDINTG FT SKPHTSVAGLYPLVGWKIGADVVYLAEGNAAGTGAAIKWAQDLELFSDVKETEAIATSV FT EDSDGVFFVPSFSGLQAPLNDPKACASFMGLKPSTTKRHLVRAILESIAFRNKQLFDVM FT LRETRIPITKIRADGGVCTNDFIMQLTADLLGRKIARPSHFDMSCLGAAFVAGLGTGYW FT RNQEELKKLLSTDQHFLPRRSKSEGEKGGLYRGVLQSWEKALQRSMHWYNQP" XX SQ Sequence 3076 BP; 860 A; 636 C; 702 G; 878 T; 0 other; cttttacagt ggcatacgcg gccgcctcta gtttcctcca acatctgtta tgtgctagaa 60 aaggaaagcg aatgtttttg gctttaatat caacactaga tatttcattt gccgatttaa 120 aatagggcgc gagatcacat gtgtgagttg gggaaagttt gcgggactca gtgctttcgg 180 ttattgctcg ttcttataaa ataaactttc agcgtaatga acatatttaa tcggatttct 240 taacggatta aaaatctgcc aggcgtctgg cattgaagtc tccgggggta tgaaactcaa 300 aggtttacgg agcaaagttg aaacgaggat gatttgagaa gcgtggatcc ttcctgacgg 360 ccatggctac tgaagtgtcc tgtgtgcggc tttctgaatg agcgctttac atcgtcatgg 420 ggactcagag aaacggctac agcaaacgag agactttcat tctctctgtg gacatgggga 480 caacctccat caggtgccat gtgtacgaca agagcgccag tattagaggg tcctgctctg 540 ctaaggtgtc ccttctgtat cctcagcctg ggtgggttga gatcgaccct gatgaactgt 600 gggatggctt cgtcactgtt gtcaaaggag cagttcaaga ctcaggctta cagatgtgtc 660 aaatggagag tcttggcatc tcaacccaga gggcaacatt catgacctgg gacagaaaca 720 caggaaaacc atttcataaa ttcatcacct ggcaggacat gagggcagct gagctggtga 780 ggtcctggaa cggctcctgc gctatgaaga cggtacacgg cgtgatgaag atgctgcact 840 tcctcagcag acagaagcgc ttccttgcag ccagtttggt agtttttacc acgcagcatg 900 tgtccctgcg ccttgtctgg gctttgaaca acatccctca gttgcggcag gcagttgaag 960 atggctcctg ttatttcggg accatagaca cctggctgct gtacaaactg actaaaggac 1020 tggttcatgc cacagattac tctaatgcca gtgcaacagc aatatttgat tcctatcaga 1080 tgtgctggag tggatttctt tgctcactcc tctctatacc tctctccatc cttcccaaag 1140 tgcaggacac cagtcataaa ttcggcttgt gtgattcgtc catctttgga gtgcccatcc 1200 caatcatgtg tgttatggcg gaccaacaaa cggccatgtt tggagagtgt tgtttcgaca 1260 ctggtgatgt gaagatcacc atgggcacag ggaccttcat ggacatcaat acaggaagta 1320 aaccgcacac gtctgtagcc ggcctttatc cactggtggg ctggaagatc ggtgctgatg 1380 ttgtgtatct ggctgaaggt aatgctgcgg gaacaggtgc tgccattaaa tgggcgcagg 1440 atttagagct cttctctgat gtgaaggaga ctgaggccat tgccacaagt gtggaagact 1500 cagatggagt gttttttgtg ccctctttca gtggcttaca ggctcctctg aatgatccga 1560 aggcttgtgc ctctttcatg ggcttaaaac cttccacaac aaagagacac ctggtccggg 1620 ctattctgga gtctatagct ttcaggaaca agcagctctt tgatgtcatg cttcgtgaaa 1680 cccgtatccc tatcactaaa atcagggcag atggaggcgt ctgcaccaac gacttcatca 1740 tgcaactgac ggctgatctg ttgggacgca aaatcgcacg accaagccat ttcgacatgt 1800 cctgccttgg agctgctttt gttgcaggac tgggaaccgg ctactggagg aaccaagaag 1860 agctgaagaa gcttttgtca actgaccaac acttccttcc cagacggagt aaatcagaag 1920 gggagaaggg aggcctgtac agaggagtgc tgcagagctg ggagaaagcc cttcagcgct 1980 ccatgcactg gtacaaccag ccctgattca ccaaaaagca cacacttatc ctgcaaactc 2040 catcctcacc actgcagatt ctctcagtgt gactcaggga gaaataaaat aacataatga 2100 atctgaaaag gattcatttg gaaacttcaa cggttacact ttaagagtca ataaatcaaa 2160 agaggtttta cagatttaca gctggtttgt gcaaatgtga atccagcgct attatgatga 2220 caattcctac ttcagaataa gacagttata tatagtatta tttagatttt gccaatcaat 2280 aatttagtca ttaggtgcct ttatgaggtg cctttatcta atactgttta aattatgaac 2340 tctctttgtg ccttatggga taattcacct aaaaatgaac attaaatggc agccattatt 2400 aggaatgaaa caagctgtaa aagtcaatgg ctgttttttt cccccaacat tcttcaaatg 2460 attttctttt gtgtccaaca gaaataagaa attcaggttt agaactaatg gatgatgaaa 2520 aaatgacaga attaaaatgt ttgggtgaac tatcccttca atgaggtgct tctgtactct 2580 tctcccaata ggaggcttgt aattgtatgt aatttgtgtc gtttacatag aaaggaagtt 2640 caactacact aaagaattaa tgcacacact gcatccttta gtattgtatg ataactaata 2700 tagcattcgt tacgatgcta ttgtaaattg tacgtaattt tagttcatat tttctaattg 2760 caggtttagt cttgtaatat ctgatgtacc tcttaatacg aagaaaatgc tgcaaacttg 2820 gaaaacttgt tacctgaagt gctttatttt ctaatgtttt tattttatat ttttctcagt 2880 ataaagcgtc cagcctgcta tttttatata cgggaatgta gcagtgacgc agtttcactt 2940 gattctatca acagtggcca atgttatcat gcactcaact gtagtaaatg agtaaccgtg 3000 aacttgtaat tataagaggc tgttgtatct cagagaagga ataaatatac tgaatattaa 3060 aaaaaaaaaa aaaaaa 3076 // |
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