 |
|
EBI DbfetchID BC126725; SV 1; linear; mRNA; STD; MAM; 2319 BP. XX AC BC126725; XX DT 03-NOV-2006 (Rel. 89, Created) DT 12-JUN-2008 (Rel. 96, Last updated, Version 5) XX DE Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide DE N-acetylgalactosaminyltransferase 8 (GalNAc-T8), mRNA (cDNA clone DE IMAGE:8475367), partial cds. XX KW . XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RC NIH-MGC Project RP 1-2319 RA Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y., RA Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C., RA Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J., RA Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J., RA Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A., RA Holt R., Jones S.J., Marra M.A.; RT ; RL Submitted (31-OCT-2006) to the EMBL/GenBank/DDBJ databases. RL BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, Suite 100, RL 570 West 7th Avenue, Vancouver, British Columbia V5Z 4S6, Canada XX DR Ensembl-Gn; ENSBTAG00000004795; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000013591; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000015731; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000016732; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000017378; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000021675; Bos_taurus. DR Ensembl-Gn; ENSBTAG00000025029; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000018074; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000020880; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000022242; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000023106; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000028884; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000037835; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000042616; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000052128; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000054027; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000055575; Bos_taurus. DR ImaGenes; IMAGp998B0518464Q. DR ImaGenes; IRAKp961I06289Q. XX CC Contact: Robert Kirkpatrick CC Canada's Michael Smith Genome Sciences Centre CC BC Cancer Agency CC Suite 100, 570 West 7th Avenue, Vancouver, British Columbia, CC Canada, V5Z 4S6 CC Tel: 1-604-707-5900 x5406 CC Fax: 1-604-876-3561 CC Email: robertk@bcgsc.ca CC Tissue Procurement: Lee Alexander, USDA, ARS, NPA CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Bovine Genome Sequencing Program, Genome CC Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y, CC Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L, CC Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H, CC Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W, CC Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R, CC Jones S, Marra M CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 289 Row: i Column: 6. XX FH Key Location/Qualifiers FH FT source 1..2319 FT /organism="Bos taurus" FT /lab_host="DH10B" FT /strain="L1 Hereford" FT /mol_type="mRNA" FT /clone_lib="GC_BGC-29" FT /clone="IMAGE:8475367" FT /tissue_type="Fetal skin , female fetus 6 months, L1 FT Hereford" FT /note="Vector: pExpress1" FT /db_xref="taxon:9913" FT gene <1..2319 FT /gene="GALNT8" FT CDS <1..2051 FT /codon_start=3 FT /gene="GALNT8" FT /product="GALNT8 protein" FT /db_xref="GOA:A0JNJ8" FT /db_xref="InterPro:IPR001173" FT /db_xref="InterPro:IPR008997" FT /db_xref="UniProtKB/TrEMBL:A0JNJ8" FT /protein_id="AAI26726.1" FT /translation="LCSQHRQGSAHCDPQFAWAVTLPSAPREQQSQGQNNMLRRNVLGV FT LSIGLLLVFALNLLLIFYTKRIVQELILGDRQNKLHFAPSELNWTVMDRLSRLEANLQH FT LKQTMKLATKQSEDGICTLAMVKDEKLYPFPDRAHAKEGGFFKENPHKVLFPDSELFKK FT WGRDLSEAQQKKAEDLFQKFGYNVYLSDRLPLDRTLPDTRDSRCHWKQYPSQLPSLSVI FT LIFMDEALSVIQRAITSIIQRTPPRLLKEIILVDDFSSLGELKADLDEKIKLYNQKCPG FT LLKIVRHTERRGLAAARNTGREAATADVVAILDAHIEVNVGWAEPILARIQEDRTVIIS FT PVFDNILFDTFELIKYALAVDGFNWELWCRYDALPKAWVDLHDVTAPVRSPSIMGILAA FT NRLFLEEIGSLDGGMLTYGGENVELSLRVWQCGGKIEVLPCSRVAHLERHHKPYSLDLR FT IPLKRNALRVAEIWMDEYKDMVYMAWNIPLQNSGIDFGDISSRMALRKKLKCKTFDWYL FT KNVYPLLKPVRSVVAYGRMKNTLDERVCLDQGAVPGNTPIMHYCHQYNSQNVYYHVTGE FT FYVGPLIAQRDADDRCLTDPGKGEKPTLEPCSKAVKDRLNIHWDFKPGTKEEAGPEFQT FT RRTTPVFLIAAGQRGPGPSTSPEDETPPAPAPRVDRPDAPPVASHEP" XX SQ Sequence 2319 BP; 629 A; 569 C; 618 G; 503 T; 0 other; ctctatgcag ccagcaccgt cagggctcag ctcactgtga tcctcagttt gcctgggcag 60 tgacactacc ctcagccccc agggagcagc agagccaggg acagaataac atgctcagga 120 gaaatgtcct cggagtcctc agcatcgggc tgctgctggt cttcgctctc aatctcctcc 180 tgatatttta cactaagagg attgtacagg agttgatcct gggggatcgc cagaataagc 240 tgcattttgc tccgtctgaa cttaactgga cagtgatgga cagactctct cgactagagg 300 cgaatttgca gcatctgaaa caaactatga agctggctac aaaacaatca gaagatggga 360 tttgcacgct ggcaatggtg aaagacgaaa agctctatcc ttttccagat agagctcacg 420 ccaaggaggg tggcttcttc aaggaaaatc cccacaaggt tctcttccca gactcagaac 480 ttttcaagaa gtggggtagg gacctttctg aggctcagca gaaaaaggct gaggacctct 540 tccagaagtt tggctataac gtgtacctca gtgaccggtt gcccctggat cgtaccctcc 600 cggacactcg cgattccagg tgccattgga agcagtatcc ttcacagctc ccatctctca 660 gcgtcatcct catattcatg gatgaagctc tgtctgtcat ccagcgagcc atcaccagca 720 tcatccagag gaccccccct cgactgttga aggagatcat cttagtggat gattttagct 780 cacttggaga attaaaggca gacttggatg agaagattaa gctttacaac cagaagtgtc 840 caggactcct gaagatagta cgacacacgg agagaagagg tctggctgca gctcgcaaca 900 ccggcaggga ggcggccacg gctgatgtgg ttgccatctt ggacgctcac attgaagtga 960 atgttgggtg ggctgagccc atcttggctc ggattcagga agaccgcacc gtgatcatat 1020 ctcctgtgtt tgacaacatt ctttttgaca cctttgaact gattaaatat gcactggcgg 1080 ttgacgggtt taactgggaa ctctggtgcc gctatgatgc actgccgaaa gcctgggttg 1140 atctccacga tgtcactgct cctgtgagaa gtccttccat catgggcatc ctggctgcca 1200 acaggctctt cttggaagaa attggctctc tggatggtgg gatgctgacc tatggaggag 1260 agaatgtgga acttagcctg agggtgtggc aatgtggagg taagattgaa gtcttgccct 1320 gctcccgagt cgcccacctg gagagacacc acaagcccta ctctttagac ctgagaattc 1380 ccttgaagcg gaacgccctg agagtggctg aaatctggat ggacgagtac aaagacatgg 1440 tctacatggc ctggaacata cctctccaga actctggaat cgattttgga gacatttctt 1500 ccagaatggc actccggaag aaactgaaat gcaaaacttt tgactggtat ctgaaaaatg 1560 tttatcctct cctgaaacca gtccgcagcg ttgtggccta tggaagaatg aaaaacacgt 1620 tggatgaacg cgtctgcctg gaccagggag ctgttccagg caacaccccc atcatgcatt 1680 actgccatca atacaattcc cagaacgtct actatcacgt aactggggaa ttctatgtgg 1740 gaccactgat tgcacagaga gacgctgatg atcgctgtct gacagaccct ggtaaagggg 1800 agaagcccac tttagagcca tgttccaagg cagtcaaaga cagactgaac atacattggg 1860 attttaaacc aggaactaag gaagaggctg gcccagagtt ccaaaccagg agaactacac 1920 ctgtatttct gatagcggct ggacaaagag gaccgggacc ctcaacttct ccagaagacg 1980 agacaccccc cgcccctgct cctagggtgg acaggcctga cgctcctcca gtggcctccc 2040 atgagccatg accaggctgg aaaaaactgg gatgggaccc atgggcattt aaagatggga 2100 cttgggatac tgggctgagg ctggggcagg gaggtgagac agaagaactg agggtgcaga 2160 cagaagaaac caggtgtgga ggggtcaggg gtcgagtgac gccggcaagc gcatggctgt 2220 gctgcaggac cgtccaggaa aagggtggcc atggaggact cacaataaat acagccggag 2280 tctcgaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa 2319 // |
|