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EBI DbfetchID BC125946; SV 1; linear; mRNA; STD; VRT; 2717 BP. XX AC BC125946; XX DT 03-NOV-2006 (Rel. 89, Created) DT 03-DEC-2006 (Rel. 90, Last updated, Version 3) XX DE Danio rerio zgc:154054, mRNA (cDNA clone MGC:154054 IMAGE:8008617), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2717 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2717 RG NIH MGC Project RA ; RT ; RL Submitted (19-OCT-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ImaGenes; IMAGp998N0717184Q. DR ImaGenes; IRAKp961L15286Q. DR ImaGenes; IRBOp991C0681D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Len Zon, Harvard CC cDNA Library Preparation: Open Biosystems CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 286 Row: l Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2717 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_10" FT /clone="MGC:154054 IMAGE:8008617" FT /tissue_type="Whole, adult zebrafish" FT /note="Vector: pExpress1" FT /db_xref="taxon:7955" FT gene 1..2717 FT /gene="zgc:154054" FT CDS 101..1675 FT /codon_start=1 FT /gene="zgc:154054" FT /product="zgc:154054" FT /db_xref="GOA:A0JMN5" FT /db_xref="InterPro:IPR006759" FT /db_xref="UniProtKB/TrEMBL:A0JMN5" FT /db_xref="ZFIN:ZDB-GENE-061103-283" FT /protein_id="AAI25947.1" FT /translation="MRLCHGKFLFIAGFLCMMMLTFRHTSRPDNVPSQLHEVYERLLRA FT EQRGEVLSQELLKVLGHLQNRSIAQSNLSFSNSSAILEERVLRLLLPSQPNALVYLPHL FT KEHKDSLKPIVHLGRRRKGVSMVFGVPTVHRQKQSYLVNTLQSLLFDLSTAQKKDIVIV FT VFVAETNPAFVNSVVQSVQDNLPDAVSSGVIEVISPSPHFYPDFNNLKETFGDPKERVK FT WRTKQNLDYSFLMLYAQSKGTYYVQLEDDIVAKQGFFETMKTYTDNVLTEEWLYLEFSQ FT LGFIGKLFRSSDLPIIVEFILMFHRDKPIDWLLDHFLWVKMCNPEKDAKHCSNEKARLK FT RTHKPSLFQHVGLHSSLPGKIQNLRDKDFGKQVLFKGHSNPSAVLSTTLEQYQTHSLER FT AYNGEDFFWGLTPKRGDYILITFTRPQAIKEYFFRSGNIETNGDRFYNTTVEVLPVHLS FT VKEKVSRGEMACCKPSSDGFVQIGSFKNGVAEGEVDAALGISEAMRILVHSDSDVWVLL FT SEIFIKV" XX SQ Sequence 2717 BP; 774 A; 537 C; 599 G; 807 T; 0 other; gtcaaatgct gacgttattc cagctcgttt agacgcggct gctgttgttg tgtcgggtct 60 tcttgaggag tttgcgagtt tttctgagga atgaggtgaa atgaggctct gtcatggaaa 120 atttttattt atcgccgggt ttttgtgtat gatgatgtta acattcagac acacgtccag 180 accagacaat gtgccatcgc agctgcatga ggtctacgag cggctactgc gagcagagca 240 gcgcggggag gttttatcac aggagctgct gaaggtgctg ggtcatctac aaaaccgcag 300 catcgctcag tctaatctca gtttcagcaa ctcctcagct atattagaag agcgagtcct 360 tcggctgctt ttgccttcgc agccgaatgc actggtgtat ttgcctcacc tgaaagagca 420 caaggacagt ctgaaaccca tcgttcacct gggcagacga cgcaagggag tgtctatggt 480 gttcggcgtg cccaccgttc acaggcagaa acagagttat ctagtgaaca cactccaatc 540 tctgcttttt gacctttcca ctgcacagaa gaaagatatt gtcattgtag tctttgttgc 600 tgagactaat ccagcgtttg taaattctgt tgtacagagt gtacaggaca atctcccaga 660 tgccgtcagt tctggagtga ttgaggtgat ctctccgtct cctcactttt acccagactt 720 caataatctg aaggaaactt ttggagatcc caaggagcga gtcaaatgga ggaccaagca 780 gaatcttgac tacagcttcc tcatgctgta tgcacagtct aagggcacct attatgttca 840 gcttgaggat gatatagtag cgaaacaagg attctttgag accatgaaaa catatacaga 900 taatgtgctt acagaagagt ggctttattt ggagttttcc cagctgggat tcattggcaa 960 gcttttccgc tcgtcagatc tgccaataat tgtggagttc atcctgatgt tccacagaga 1020 caagcccatc gactggctgc tcgatcactt cctgtgggtt aaaatgtgta acccagagaa 1080 agacgcgaaa cactgcagta atgagaaggc ccgactgaag agaacccaca aaccctccct 1140 gtttcagcat gtcggtctgc attcctctct gcccggtaaa atacaaaacc tgagggataa 1200 agattttggg aagcaggtgc tttttaaagg ccactcaaac ccatctgcag ttctcagcac 1260 caccctggag caatatcaga ctcactctct ggaaagagct tataacggag aggacttctt 1320 ctggggtctc acacccaaac gcggagacta catcctcatc actttcacca gacctcaggc 1380 catcaaagag tacttttttc gatctggcaa tattgagaca aatggtgacc ggttttacaa 1440 cacaacagtg gaagtgcttc ctgttcatct ttctgtgaag gagaaggtgt ccagaggaga 1500 aatggcctgc tgtaaaccct cgtccgatgg ctttgtccag atcggctctt tcaagaacgg 1560 agtggctgaa ggagaagtgg acgcagctct gggtatatca gaggccatgc gaatcctggt 1620 tcactcggac tctgacgtct gggttcttct cagtgagatc tttattaaag tttgatgagc 1680 tcaggagaga ggggaaattt gagccgcatg ctaacgtgtg aaaactgcag ctctgtacaa 1740 cagcgcgctc tgctgggctg gaaaataact acaactgcgt gccatcttca attacaagag 1800 gattccctcc tcggtttgag cgggaaaacg agtttacata cttatttggg taatactttg 1860 caataagttt gcattagtta gttatgttag ctaatgcatt tactagcatg tacaatgaat 1920 gaacaataca tttattacag tatttgttca tgtttgttaa tgattgttca ttgttaactc 1980 atggtgcatt aactagcatg ggataatata ttagtaaatg ctaaactatg attaataaat 2040 gctgtactag tattgttcat tattcgttta tgttggtgga taccttgact aacattaact 2100 aatgaaagct tactgtaaag tgcgacccat atttgtttaa tgtggtccat gaaggttgtt 2160 tattaatttt gtctaagtta tttacatttt tttaagttta ttattttgtg ttgcaaatac 2220 aacttgaagg atcacgcaag ggatttgact atattttata atatattata tctgactgtt 2280 aataacatct gacttgaatg tcaataaatg gcagtggtgt acgctgttac tagttgatgg 2340 cattattttt gtgctcatat catggttttt ctcgttatat actgtacttc catatactgg 2400 aagattattt ccaccacaga agaacatgtt agcaaaaaaa aaaaatcgca ataaaatgca 2460 gaattgtgag ataaatggct cgtttccact gactggtaca gtacggtacg gttcgggtct 2520 gcgtctgttt tgtgagaagt gctttacact cataaatact tgtgtataaa tgtttattac 2580 aaacttttct atgaacatga tttgattata tctgcagatc aatgacagcg tgaaattgcc 2640 tactgtaacg tctgtaatta tataaaataa ataaatagat aaatgcaaca taaaaaaaaa 2700 aaaaaaaaaa aaaaaaa 2717 // |
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