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EBI DbfetchID BC124813; SV 1; linear; mRNA; STD; VRT; 1592 BP. XX AC BC124813; XX DT 05-OCT-2006 (Rel. 89, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 4) XX DE Danio rerio zgc:154116, mRNA (cDNA clone MGC:154116 IMAGE:8357577), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1592 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1592 RG NIH MGC Project RA ; RT ; RL Submitted (03-OCT-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000006281; Danio_rerio. DR Ensembl-Gn; ENSDARG00000018367; Danio_rerio. DR Ensembl-Gn; ENSDARG00000034465; Danio_rerio. DR Ensembl-Gn; ENSDARG00000035909; Danio_rerio. DR Ensembl-Gn; ENSDARG00000052326; Danio_rerio. DR Ensembl-Gn; ENSDARG00000054955; Danio_rerio. DR Ensembl-Tr; ENSDART00000004854; Danio_rerio. DR Ensembl-Tr; ENSDART00000022139; Danio_rerio. DR Ensembl-Tr; ENSDART00000047461; Danio_rerio. DR Ensembl-Tr; ENSDART00000048433; Danio_rerio. DR Ensembl-Tr; ENSDART00000056752; Danio_rerio. DR Ensembl-Tr; ENSDART00000074158; Danio_rerio. DR ImaGenes; IMAGp998J0718141Q. DR ImaGenes; IRAKp961P01286Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Cassandra Belair, Dr. Leonard Zon CC cDNA Library Preparation: Open Biosystems CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 286 Row: p Column: 1 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..1592 FT /organism="Danio rerio" FT /lab_host="T1-resistant E.coli" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_29" FT /clone="MGC:154116 IMAGE:8357577" FT /tissue_type="Whole body, 30-day juvenile, WIK strain, FT probable males" FT /note="Vector: pExpress1" FT /db_xref="taxon:7955" FT gene 1..1592 FT /gene="zgc:154116" FT CDS 279..1331 FT /codon_start=1 FT /gene="zgc:154116" FT /product="zgc:154116" FT /db_xref="GOA:Q08B99" FT /db_xref="InterPro:IPR003859" FT /db_xref="UniProtKB/TrEMBL:Q08B99" FT /db_xref="ZFIN:ZDB-GENE-061013-84" FT /protein_id="AAI24814.1" FT /translation="MPDSTGNFSLLQRTCSLVVLLCFLHIFVTVIYYMRNSDSRPAFAQ FT NQQQRPTIHRKLAEQRGTTEDSRPAANASSNVQELQICPEEPPRLVGPLRVEFSDPITL FT EMVRTENSVLQEGGRFRPPDCIARQKVAMIIPFRNRDEHLKFWLYYLHPILQRQQLDYG FT VYVINQDGEDTFNRAKLLNIGYAEALKEYDYDCFVFSDVDLIPMDDRNIYKCYNQPRHL FT AVSMDKFGFRLPYTQYFGGVSSLSKEQFLKINGFPNNYWGWGGEDDDIFNRISSRGMSI FT SRPDGLVGRCRMIRHERDKQNDPNPQRFDRIAHTRETMATDGINSLKYNVVKIEKDLLF FT TKITVDVGKP" XX SQ Sequence 1592 BP; 417 A; 423 C; 424 G; 328 T; 0 other; cagctcctca ggctacagtt tccgatactt tcccacactt tataacggaa ctcgtgtttg 60 tggagatcga gaatcgactt cactgaaggg cacgagtgga gctctgactg acttcagaga 120 gaagtgttca atatctgatt gtaagctcta ggtgagtaga tactcgaggc atgttcccta 180 aagctccagg aagcaggtag agggccgggg gtgagtgttt gctggacatt ctctacagcg 240 ggagtctgag ccacaggtgt ccgcctcagg gctccagcat gccggactcc accgggaact 300 tcagcctcct gcagcggacc tgctctctgg tggtgctgct gtgcttctta cacatctttg 360 tcaccgtcat ttactacatg aggaactcgg actctcggcc agctttcgcc cagaaccagc 420 agcagagacc gacgatacac aggaaactgg cggagcagag gggcaccact gaggacagca 480 gacccgcggc caacgcctcg agcaacgtcc aggagctgca gatctgccca gaggagccgc 540 cgcgcctggt gggtcctctg cgtgtggagt tctcagaccc gatcacgtta gaaatggtgc 600 ggacagagaa cagtgttctg caagagggcg gacgcttcag acccccagac tgcatagctc 660 ggcagaaggt ggccatgatc atccccttcc ggaaccgaga cgagcacctg aagttctggc 720 tctattacct gcaccccatc ctgcagcgcc aacagctcga ctacggcgtc tacgtcatca 780 accaggatgg cgaggacacg tttaatcgag ctaaactcct gaacatcggc tatgcggagg 840 cgctgaagga gtacgattac gactgttttg tgttcagcga cgtggacctg atcccgatgg 900 atgaccgcaa catctacaag tgctacaatc agcccagaca cctggccgtc tccatggaca 960 agttcggctt caggctgccg tacacacagt atttcggtgg cgtttcgtcg ctcagcaaag 1020 agcagttcct gaagatcaac ggattcccca acaactactg gggctggggc ggagaggacg 1080 acgacatctt caacaggatc tcctccagag ggatgtcgat atctaggcct gacggactcg 1140 tgggtcgctg taggatgatc cggcatgaga gagacaagca gaacgaccca aaccctcaaa 1200 gatttgaccg aatcgcgcac acaagggaaa ccatggcaac tgatgggatc aattcgctaa 1260 aatataacgt ggtaaaaatc gagaaagacc tgctcttcac caaaatcaca gtggacgtgg 1320 gcaaaccctg attcctgcac agacaccaaa taaaagctcc accaaacgtg ccttcattct 1380 gagagtggac tgtagagatt atatgtgtgg cagacgggag tgctgccatc tttgcacatg 1440 tgatggcgag cgcaggcatc ggcggactct tctggaagcg tccggagagt ttctcactct 1500 ctcctgctga ggagcaaact ttattttgag ccatttcttt gcattaaatc gcagatgcac 1560 atgaaaaaaa aaaaaaaaaa aaaaaaaaaa aa 1592 // |
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