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EBI DbfetchID BC124297; SV 1; linear; mRNA; STD; VRT; 2404 BP. XX AC BC124297; XX DT 25-SEP-2006 (Rel. 89, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 4) XX DE Danio rerio zgc:153274, mRNA (cDNA clone MGC:153274 IMAGE:7902006), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2404 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2404 RG NIH MGC Project RA ; RT ; RL Submitted (22-SEP-2006) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000026338; Danio_rerio. DR Ensembl-Gn; ENSDARG00000030490; Danio_rerio. DR Ensembl-Gn; ENSDARG00000030650; Danio_rerio. DR Ensembl-Gn; ENSDARG00000034823; Danio_rerio. DR Ensembl-Gn; ENSDARG00000036430; Danio_rerio. DR Ensembl-Gn; ENSDARG00000039347; Danio_rerio. DR Ensembl-Gn; ENSDARG00000061454; Danio_rerio. DR Ensembl-Gn; ENSDARG00000063636; Danio_rerio. DR Ensembl-Gn; ENSDARG00000068208; Danio_rerio. DR Ensembl-Tr; ENSDART00000028940; Danio_rerio. DR Ensembl-Tr; ENSDART00000039705; Danio_rerio. DR Ensembl-Tr; ENSDART00000040627; Danio_rerio. DR Ensembl-Tr; ENSDART00000043660; Danio_rerio. DR Ensembl-Tr; ENSDART00000052922; Danio_rerio. DR Ensembl-Tr; ENSDART00000087657; Danio_rerio. DR Ensembl-Tr; ENSDART00000087660; Danio_rerio. DR Ensembl-Tr; ENSDART00000093163; Danio_rerio. DR Ensembl-Tr; ENSDART00000098504; Danio_rerio. DR Ensembl-Tr; ENSDART00000098895; Danio_rerio. DR Ensembl-Tr; ENSDART00000100813; Danio_rerio. DR ImaGenes; IMAGp998H0416279Q. DR ImaGenes; IRAKp961N10284Q. DR ImaGenes; IRBOp991B0686D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Will Talbot CC cDNA Library Preparation: Dr. Yutaka Suzuki and Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 284 Row: n Column: 10 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2404 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_16" FT /clone="MGC:153274 IMAGE:7902006" FT /tissue_type="Gut, (includes stomach, intestine, liver and FT pancreas), pool of 13 normal adults, wild type AB" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2404 FT /gene="zgc:153274" FT CDS 126..1898 FT /codon_start=1 FT /gene="zgc:153274" FT /product="zgc:153274" FT /db_xref="GOA:Q08CC3" FT /db_xref="InterPro:IPR000772" FT /db_xref="InterPro:IPR001173" FT /db_xref="InterPro:IPR008997" FT /db_xref="UniProtKB/TrEMBL:Q08CC3" FT /db_xref="ZFIN:ZDB-GENE-060929-998" FT /protein_id="AAI24298.1" FT /translation="MGSVTLRYFCYGCLFTSVTWSILLFLYFNLSQESRLSFRNVPVRG FT QHRFQPRFTRGPAVQHRDGSQVRKGQALEAVKPDLSPELGMIFNKQDQEVRDMGYHKHA FT FNVLISNRLGYHRDVPDTRTDKCRDRAYSVSLPTASIVICFFNEAFSALLRTVHSVLDR FT TPNYLLHEIILVDDHSELDDLKEDLDSYVQQHLQKKVKVVRNEKREGLIRGRMIGASHA FT TGEVLVFLDSHCEVNEAWLQPLLTPIKENRKTVVCPVIDIISADTLVYTPSPIVRGGFN FT WGLHFKWDPVPMSELNSPDGAIRSPTMAGGLFAMDRNYFYELGQYDRGMDIWGGENLEI FT SFRIWMCGGQLLIVPCSRVGHIFRKRRPYGSPGGQDTMAHNSLRLAHVWMDDYKEQYFA FT LRPELRNRDYGDISERVSIRKRLQCHSFKWYLDNIYPEMQVSSPHKPQQPVFINKGLKR FT PKVLQRGRLRNLLADKCLVAQGRPSQKGGAVVVKDCDPQDPEQEWAYDEEHELVLAGLL FT CLDMSEIRSSDPPRLMKCHGSGGSQQWTLGKKNWLYQVSVGQCLAVGDPLSIKGYVSMA FT ICDDSRSQQWQLEG" XX SQ Sequence 2404 BP; 596 A; 555 C; 635 G; 618 T; 0 other; atgccgtgtc tcctcaccag cgagtaacgg gcagtaggat tgagcgaagg agaggaatgg 60 acctgtgaaa gacctcttca tcagcgaggg cctgataatg gccagccaag gatgctagca 120 ttaccatggg cagcgtcact ctgcgctact tttgttatgg ttgcctcttc acctccgtga 180 cctggtcgat tcttctgttc ctctatttca acctcagcca ggaaagccga ctatccttca 240 gaaatgtgcc cgtccggggg cagcaccgtt ttcagcctcg ttttacgcgt ggccctgcag 300 tccagcatag agatgggagt caagtgcgta aaggccaagc actggaagcc gtcaagccag 360 atctctctcc agagctggga atgattttta acaagcagga ccaagaggta cgagatatgg 420 gctatcataa gcacgccttc aatgtactca tcagtaaccg gctcggctac cacagagacg 480 tcccagacac caggactgac aagtgcaggg acagggctta ttcagtgtcc ttgcccactg 540 ccagtatagt gatctgtttc ttcaatgagg cgttctctgc cctcctgagg acggttcaca 600 gtgtgctgga tcgcacacca aactacctgc tccatgagat catactggtg gatgaccaca 660 gtgaactgga tgatctgaag gaagacttgg attcttacgt tcagcagcac ctgcagaaga 720 aagtaaaggt ggttcgtaat gagaagaggg aggggctgat ccgcgggagg atgattggtg 780 catctcatgc tacaggtgag gtgttggtgt ttctggatag tcactgtgag gtgaatgagg 840 cctggctcca gcctctgctt acccctatta aagagaacag gaaaactgtg gtgtgcccag 900 tcatcgacat catcagcgca gacacactag tatacacccc ttctcctatc gttcgaggag 960 gattcaactg gggcttgcac tttaagtggg acccagtgcc catgtccgaa ctcaacagcc 1020 ctgatggagc cataaggtct cctacgatgg caggtggact cttcgccatg gacagaaatt 1080 acttttatga gctcggtcag tacgaccgtg gcatggatat atggggtgga gagaacttgg 1140 aaatatcttt tcggatttgg atgtgtggag gccagttact gatcgttccc tgctccaggg 1200 tggggcacat cttccgcaag cgccggccgt atgggtcacc tggaggtcag gatacaatgg 1260 ctcataattc cctgcgtttg gcccatgtct ggatggatga ctataaggag cagtactttg 1320 ccttgcggcc tgagctgagg aaccgggact atggggacat cagtgagcgg gtctctattc 1380 gcaagcggct gcagtgtcac tccttcaaat ggtacctgga caatatatac cccgaaatgc 1440 aggtgtcctc tccgcacaag ccccagcagc ctgtcttcat caacaagggt ttaaagagac 1500 caaaagtact gcagcggggt cggttgcgta atctcttggc tgacaagtgt ctggtggcac 1560 agggccgtcc cagtcagaag gggggcgctg tggtggtgaa agactgtgac ccacaggacc 1620 ctgagcagga atgggcatat gatgaggaac atgagttggt tctagccggg ctgctgtgtt 1680 tggacatgtc agagattcgt tcctccgacc cgccgcgcct catgaagtgt cacggctctg 1740 gtggatctca gcagtggaca ctggggaaaa agaactggct gtaccaagtg tcagtggggc 1800 agtgtttggc tgtgggcgac cctctcagca tcaaagggta tgtttccatg gcgatctgtg 1860 atgattcccg ctctcagcag tggcagttag agggttgagg atgctggtag tgaagagcca 1920 ctagtaaatc cagctcagac agaggactga actgcagcag cacagcgcgg gcaactcaga 1980 cgtggccatc agaccctcca gaatgctgga gtcacgtatt cgaggtcctg atctcaactt 2040 tgaatttgaa gccttggtct gacgctttct tgacccattt tctttactca gacactattt 2100 taaagagtat tttaaaagaa tcgtgctcag tatttgtacg ttttaactat ttgaaatgta 2160 aactatttgc acagagaaaa tctattttca ttgtaaagac gtcttaaata taatcacagt 2220 ctgctagatt ttatgttcat cagttttaat gattaattta acatttctta gcattatata 2280 tatataaaca taagcctgat gtttgatttc cttttatcaa gttctgtttg atttcatgat 2340 cactggattt accttgagct taataaactg tcagtgtgct cttctgtaaa aaaaaaaaaa 2400 aaaa 2404 // |
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